PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462962815
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family HD-ZIP
Protein Properties Length: 175aa    MW: 19745.7 Da    PI: 10.1848
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462962815genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox51.12.3e-162883256
               T--SS--HHHHHHHHHHHHHSSS--H.HHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox  2 rkRttftkeqleeLeelFeknrypsa.eereeLAkklgLterqVkvWFqNrRakek 56
               rk+ ++tkeq   Le+ F+++++++  +++  LAk+l+L  rqV vWFqNrRa+ k
  462962815 28 RKKLRLTKEQSALLENRFKEHSTLNPkKQKVALAKQLNLRPRQVEVWFQNRRARTK 83
               78889*****************9996257889**********************98 PP
2HD-ZIP_I/II119.61.6e-3828117190
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLepe.rKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                  +kk+rl+keq++lLE+ F+e+++L+p+ +Kv+la++L+l+prqv+vWFqnrRARtk+kq+E+d+e Lkr++++l+een+rL++e ++Lr +
    462962815  28 RKKLRLTKEQSALLENRFKEHSTLNPKkQKVALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCELLKRCCETLTEENRRLHRELQQLR-S 117
                  69***********************96379**********************************************************9.4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.6E-171186IPR009057Homeodomain-like
PROSITE profilePS5007116.1632485IPR001356Homeobox domain
SMARTSM003892.3E-112689IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.4E-162688IPR009057Homeodomain-like
PfamPF000469.5E-142883IPR001356Homeobox domain
CDDcd000866.62E-142886No hitNo description
PROSITE patternPS0002706083IPR017970Homeobox, conserved site
SMARTSM003402.5E-2085128IPR003106Leucine zipper, homeobox-associated
PfamPF021836.0E-1085118IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MHVDLFDWGA LYSVVSSAAD DEEGCNSRKK LRLTKEQSAL LENRFKEHST LNPKKQKVAL  60
AKQLNLRPRQ VEVWFQNRRA RTKLKQTEVD CELLKRCCET LTEENRRLHR ELQQLRSLNQ  120
AHPAAFFMPA TALSLCPSCE RLASAPGATA ADRPKAAGPG RAAHLFRTFT KSAAC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12632SRKKLRL
27785RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462962815
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004983488.15e-95homeobox-leucine zipper protein HOX15
SwissprotQ7G7379e-72HOX15_ORYSJ; Homeobox-leucine zipper protein HOX15
TrEMBLK4AE821e-93K4AE82_SETIT; Uncharacterized protein
STRINGSi037189m2e-94(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20553698
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.12e-64HD-ZIP family protein
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]