PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462963194

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

G2-like

Protein Properties

Length: 352aa MW: 39136.1 Da PI: 7.386

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462963194	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	107.2	9e-34	54	108	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+Wt eLHerFveav+qLGG+ekAtPkti++lm+++gLtl+h+kSHLQkYRl 462963194 54 KPRLKWTAELHERFVEAVNQLGGPEKATPKTIMRLMGIPGLTLYHLKSHLQKYRL 108 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.663	51	111	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	9.2E-32	52	109	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.15E-17	53	109	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	7.4E-24	54	109	IPR006447	Myb domain, plants
Pfam	PF00249	2.6E-10	56	107	IPR001005	SANT/Myb domain
Pfam	PF14379	1.8E-25	155	201	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 352 aa Download sequence Send to blast
MCIQQADISM YHQQQQQLQS CNQHLSSRPS LPPEKQFLLQ GGGDSGLILS TDAKPRLKWT 60 AELHERFVEA VNQLGGPEKA TPKTIMRLMG IPGLTLYHLK SHLQKYRLSK NLQAQANAVH 120 AKNVSGCRTA TDKLCEGSGS PASHFNLEPE INRSMHISEA LQMQIEVQRR LHEQLEVQRH 180 LQLRIEAQGK YLQSVLEKAQ EALAKQTVEG DVLGLADAAP KMPELVAKRV RHEHAHRRQH 240 GDGSVDSCLT ACEGSAQLQR DHDMLSIGLC TTQQSAGEEG RRPSTSCEEY MFLQEPSRGA 300 SIMDGHCEIR RDDGFANAGL RTRELDLGIN NAGSCRPRNC DKIDLNGSSW NN

Sequence ? help Back to Top

Protein Sequence Length: 352 aa Download sequence Send to blast

MCIQQADISM YHQQQQQLQS CNQHLSSRPS LPPEKQFLLQ GGGDSGLILS TDAKPRLKWT  60
AELHERFVEA VNQLGGPEKA TPKTIMRLMG IPGLTLYHLK SHLQKYRLSK NLQAQANAVH  120
AKNVSGCRTA TDKLCEGSGS PASHFNLEPE INRSMHISEA LQMQIEVQRR LHEQLEVQRH  180
LQLRIEAQGK YLQSVLEKAQ EALAKQTVEG DVLGLADAAP KMPELVAKRV RHEHAHRRQH  240
GDGSVDSCLT ACEGSAQLQR DHDMLSIGLC TTQQSAGEEG RRPSTSCEEY MFLQEPSRGA  300
SIMDGHCEIR RDDGFANAGL RTRELDLGIN NAGSCRPRNC DKIDLNGSSW NN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	2e-20	54	110	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-20	54	110	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-20	54	110	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-20	54	110	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269\|PubMed:21255164, ECO:0000305\|PubMed:15592750}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462963194

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269\|PubMed:15592750}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004958726.1	1e-153	myb-related protein 1 isoform X2
Refseq	XP_025803979.1	1e-153	myb-related protein 1-like isoform X1
Swissprot	Q9SQQ9	5e-79	PHL9_ARATH; Myb-related protein 2
TrEMBL	A0A0A9DHX6	1e-162	A0A0A9DHX6_ARUDO; Uncharacterized protein
STRING	Pavir.Ba00251.1.p	1e-152	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3574	38	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04030.3	1e-78	G2-like family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Nakano Y,Naito Y,Nakano T,Ohtsuki N,Suzuki K NSR1/MYR2 is a negative regulator of ASN1 expression and its possible involvement in regulation of nitrogen reutilization in Arabidopsis. Plant Sci., 2017. 263: p. 219-225 [PMID:28818378]