PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462963540
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family bHLH
Protein Properties Length: 129aa    MW: 13015 Da    PI: 8.5095
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462963540genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH18.15e-063312255
               HHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH 22 eLrellPkaskapskKlsKaeiLekAveYIksLq 55
                L+el+P+a      K +Ka++L + ++Y+k Lq
  462963540  3 ALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 31
               79******8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.3E-10140IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.712130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.10E-7135No hitNo description
SuperFamilySSF474599.95E-10240IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 129 aa     Download sequence    Send to blast
MKALQELVPN ANKTDKASML DEIIDYVKFL QLQVKVLSMS RLGGASAVAP LVANMSSEGK  60
GLCLMPISLA SAISSATSSS LLSRPSIHPM GGAGGTLHDG GSPASPPLVN GPGGDDSRTI  120
KDAVAGGKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMap462963540
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by heat treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9697793e-47EU969779.1 Zea mays clone 335593 BHLH transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001151181.11e-53uncharacterized protein LOC100284814
SwissprotQ8S3D52e-29BH069_ARATH; Transcription factor bHLH69
TrEMBLA0A1D6HN744e-52A0A1D6HN74_MAIZE; Transcription factor bHLH69
TrEMBLA0A3L6EFW05e-52A0A3L6EFW0_MAIZE; Transcription factor bHLH69
TrEMBLB6TXR43e-52B6TXR4_MAIZE; BHLH transcription factor
STRINGPavir.Ab03158.1.p2e-47(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141937118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58010.14e-26LJRHL1-like 3
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Zhang J, et al.
    Sperm cells are passive cargo of the pollen tube in plant fertilization.
    Nat Plants, 2017. 3: p. 17079
    [PMID:28585562]