PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462963760
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family B3
Protein Properties Length: 236aa    MW: 26637.6 Da    PI: 7.7897
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462963760genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B394.95.6e-3017119197
                EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS..SEE..EE CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr..sefelvv 94 
                f+k ltpsdv+k++rlv+pk++ae++    g + e++  l++ede g+ W+++++y+ +s++yvltkGW+++vk+++L++gD+v F++++    + +l++
  462963760  17 FEKPLTPSDVGKLNRLVIPKQHAERYfplsGDSGEKGLILSFEDEAGKPWRFRYSYWTSSQSYVLTKGWSRYVKEKNLDAGDVVHFERMRGlgFGDRLFI 116
                99***************************9666668889************************************************8765333344555 PP

                EEE CS
         B3  95 kvf 97 
                +++
  462963760 117 GFR 119
                555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.6E-4112126IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-2914118IPR015300DNA-binding pseudobarrel domain
CDDcd100174.57E-2915107No hitNo description
PfamPF023622.3E-2717120IPR003340B3 DNA binding domain
PROSITE profilePS5086313.84617121IPR003340B3 DNA binding domain
SMARTSM010199.1E-2517122IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010073Biological Processmeristem maintenance
GO:0010358Biological Processleaf shaping
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MYTNLHYQHH YEREHLFEKP LTPSDVGKLN RLVIPKQHAE RYFPLSGDSG EKGLILSFED  60
EAGKPWRFRY SYWTSSQSYV LTKGWSRYVK EKNLDAGDVV HFERMRGLGF GDRLFIGFRR  120
RGESATAAVS PLPPVRVAAA AQTAGEQQPW SPMCYSTSGS YPNSPANSYA YRQSVDHDHS  180
NTHHAGESSA ALVPSRRLRL FGVNLDCGPE PEAETPTAMY GYMHQSPYAS FAEPNN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A2e-52121213113B3 domain-containing transcription factor NGA1
5os9_B2e-52121213113B3 domain-containing transcription factor NGA1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap462963760
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025827829.11e-131B3 domain-containing protein Os11g0156000-like isoform X1
SwissprotQ53QI01e-115Y1160_ORYSJ; B3 domain-containing protein Os11g0156000
TrEMBLA0A3L6PZ851e-132A0A3L6PZ85_PANMI; Uncharacterized protein
STRINGTraes_5BL_B98E347A8.11e-130(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24463889
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06250.24e-60B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]