PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462963808
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family WRKY
Protein Properties Length: 222aa    MW: 24798.4 Da    PI: 9.8529
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462963808genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY69.45.1e-2241102259
                --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-.SSSTTEEEEEEES--SS- CS
       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkvers.aedpkvveitYegeHnhe 59 
                +Dg++WrKYG K+  +s+fpr YYrCt++   +C ++k+v+++ ++dp ++ +tY ++H+++
  462963808  41 NDGHQWRKYGEKKLSNSNFPRFYYRCTYKnemKCAATKQVQQKdTSDPPLFSVTYFNHHTCS 102
                8***************************99999*******876157**************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.4E-2230103IPR003657WRKY domain
SuperFamilySSF1182904.71E-2233103IPR003657WRKY domain
PROSITE profilePS5081115.62935104IPR003657WRKY domain
SMARTSM007744.5E-3240103IPR003657WRKY domain
PfamPF031062.1E-2441101IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MALDSVSLYP GDLGSSRVTR TQQRIRKDER SWTTNTYAPY NDGHQWRKYG EKKLSNSNFP  60
RFYYRCTYKN EMKCAATKQV QQKDTSDPPL FSVTYFNHHT CSSSSNPMGS ARDVAAQSTS  120
KKAVSISFSS HSSSEQAKFL TSVATPPSAS IQSYRANQQP DRSAYAHQFH WTGTSSPTSN  180
GPVKMEVDRV SESSTSSSST GALPRTLLPI GQSRCIEYFH FL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A8e-1541101968OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap462963808
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004977387.11e-119probable WRKY transcription factor 48
TrEMBLA0A1E5W2951e-120A0A1E5W295_9POAL; Uncharacterized protein
STRINGSi011007m1e-118(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP203235100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.14e-20WRKY DNA-binding protein 55