PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462964148

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

C2H2

Protein Properties

Length: 148aa MW: 16372 Da PI: 4.1884

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462964148	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.7	4.2e-05	126	141	1	16
EEETTTTEEESSHHHH CS zf-C2H2 1 ykCpdCgksFsrksnL 16 ++C+ C+k+F+r n+ 462964148 126 FVCHVCNKTFNRYNNM 141 89********998776 PP

Sequence ? help Back to Top
Protein Sequence Length: 148 aa Download sequence Send to blast
MMSGSTGVMW QSGVDLNIGL PVGGGSGNDE DAAMEEQKDD DDDHRHHHQE EDDMEEEEEE 60 WKHARGGCKA EGDEMERGEV VPVSVEGSSK IVVGEFGPVG AESGAAMGCQ YWIPTPAQIL 120 IGPVQFVCHV CNKTFNRYNN MQWITYRR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462964148

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT086490	2e-36	BT086490.2 Zea mays full-length cDNA clone ZM_BFc0172G07 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006665114.1	2e-39	PREDICTED: zinc finger protein WIP2-like, partial
Refseq	XP_025819090.1	6e-39	protein TRANSPARENT TESTA 1-like
TrEMBL	A0A1E5UZU8	2e-38	A0A1E5UZU8_9POAL; Zinc finger protein WIP5
TrEMBL	A0A3L6SR92	3e-38	A0A3L6SR92_PANMI; Uncharacterized protein
STRING	Pavir.J31116.1.p	4e-40	(Panicum virgatum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	8e-15	C2H2 family protein