PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462964512
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family G2-like
Protein Properties Length: 307aa    MW: 34785 Da    PI: 9.9686
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462964512genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like96.42.1e-301972255
    G2-like  2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
               prlrWtpeLH +F++ave+LGG+++AtPk +l+lm+vkg ++ hvkSHLQ+YR+
  462964512 19 PRLRWTPELHLCFLRAVERLGGQDRATPKLVLQLMNVKGFSIGHVKSHLQMYRS 72
               9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-281573IPR009057Homeodomain-like
PROSITE profilePS5129411.2741575IPR017930Myb domain
SuperFamilySSF466892.33E-151673IPR009057Homeodomain-like
TIGRFAMsTIGR015579.6E-231874IPR006447Myb domain, plants
PfamPF002495.4E-82071IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MAGSSSSSAV RTYVRSKNPR LRWTPELHLC FLRAVERLGG QDRATPKLVL QLMNVKGFSI  60
GHVKSHLQMY RSKKIDDSGQ VTGGSWRDHF HDGGQVYNRG HLSLHHGQTG VRHLLSARLG  120
AWPHWNNFHE QKWLHGHHFL ASKQYYSAEA EMLIRARDNY VARAPTSVHR GFLFQNGQIM  180
NHQRRKLPQE TLPLSDEANH DDPLDLELTL DIRPRREKRK RSGGSWGKEH DNKVDEEAES  240
STATGLSLSL FLSPHPPRNC VSDSDYRVES VNVDKGKAPA ERAKGDMAGS GMTRMGEVDF  300
ERLTSQD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A5e-172074357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B5e-172074357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C5e-172074357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D5e-172074357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap462964512
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0379575e-85BT037957.1 Zea mays full-length cDNA clone ZM_BFb0204N03 mRNA, complete cds.
GenBankBT0684405e-85BT068440.1 Zea mays full-length cDNA clone ZM_BFb0191O11 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025798662.11e-97putative Myb family transcription factor At1g14600
TrEMBLA0A1E5VA201e-111A0A1E5VA20_9POAL; Uncharacterized protein
STRINGPavir.J16957.1.p1e-102(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44083671
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38300.18e-37G2-like family protein