PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462965215
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family MYB_related
Protein Properties Length: 371aa    MW: 40006.2 Da    PI: 8.5743
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462965215genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.12.3e-14141183246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g +T  E++ +++++   G++ W+ Ia+ ++ gRt++++k++w++
        462965215 141 GEFTDAEEQTIIKLHSVVGNR-WSVIAAQLP-GRTDNDVKNHWNT 183
                      789******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.3E-21120192IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-10120147IPR009057Homeodomain-like
PROSITE profilePS500904.17121134IPR017877Myb-like domain
PROSITE profilePS5129424.905135189IPR017930Myb domain
SMARTSM007172.8E-14139187IPR001005SANT/Myb domain
PfamPF002496.8E-13141183IPR001005SANT/Myb domain
CDDcd001671.36E-10142185No hitNo description
Gene3DG3DSA:1.10.10.601.3E-19148186IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MKYNTIITTV DPARGVLWRR EQVEGSDGAR RRERDVPRAG LRHAACLDRG LTRRCAGGQP  60
VPAPGASSRR ARALNSLCPP SPRAPCVPPA AAPPRARAAP IYAPGARAER RTTDELTRLQ  120
RCGKSCRLRW TNYLRPDLKH GEFTDAEEQT IIKLHSVVGN RWSVIAAQLP GRTDNDVKNH  180
WNTKLKKKLS GMGIDPVTHK SFSHLMAEIA TTLAPPQVAH LAEAALGCFK DEMLHLLTKK  240
RPAAAAAPRQ ADDTIERIKL GLSRAIMSEP NAGAADKQQQ QQPPPPPWAP ADMSEGLAGM  300
YAAYNPSSAA QVDEFVSEGN DSVGSSRGED DDMDDAKEGG GKGGAGSDIS GLFGSDCVLW  360
DLPDELANHM V
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-2012118940108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtEssential for tapetum development in anthers and microsporogenesis. May regulate the timing of tapetal programmed cell death (PCD) which is critical for pollen development. {ECO:0000269|PubMed:22086333}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462965215
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0342381e-140BT034238.1 Zea mays full-length cDNA clone ZM_BFc0028K07 mRNA, complete cds.
GenBankBT0394221e-140BT039422.1 Zea mays full-length cDNA clone ZM_BFc0012M19 mRNA, complete cds.
GenBankBT0406701e-140BT040670.1 Zea mays full-length cDNA clone ZM_BFc0113I05 mRNA, complete cds.
GenBankBT0432401e-140BT043240.1 Zea mays full-length cDNA clone ZM_BFc0129J22 mRNA, complete cds.
GenBankBT0549881e-140BT054988.1 Zea mays full-length cDNA clone ZM_BFc0168O09 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004975922.11e-135transcription factor MYB80
SwissprotQ7XQN11e-116MYB80_ORYSJ; Transcription factor MYB80
TrEMBLK3YD271e-133K3YD27_SETIT; Uncharacterized protein
STRINGSi012130m1e-134(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108673339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56110.14e-73myb domain protein 103