PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462965251

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

Nin-like

Protein Properties

Length: 479aa MW: 50535 Da PI: 10.7076

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462965251	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	71.4	1.2e-22	220	266	4	50
RWP-RK 4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkik 50 ++s e++sk Fslpi++AA+ Lgvc++vLKriCR +GI RWP+Rk+ 462965251 220 SLSYEEISKLFSLPIAEAASILGVCTSVLKRICRSHGIVRWPYRKLV 266 6899*****************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF117856	2.56E-13	31	136	No hit	No description
Gene3D	G3DSA:3.30.1330.80	3.7E-10	33	137	No hit	No description
CDD	cd11378	1.08E-13	34	130	IPR005175	PPC domain
Pfam	PF03479	1.1E-15	34	130	IPR005175	PPC domain
PROSITE profile	PS51519	16.756	203	288	IPR003035	RWP-RK domain
Pfam	PF02042	9.4E-21	221	266	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 479 aa Download sequence Send to blast
MVASSRLRNR KGKKERQAQA QVVMAAHECP SAMRAHVLEV PAGRDVLSCV AQFARRCRRG 60 ALVLGAAGHV VLRGGCTMQI LSLAGCFFPS GAGAGGTAVF LAGPRGTVLG GGVAPGGLVA 120 AGPVVVMLAT QVKSTRARKE PNLSFLAESV PVRRQPPPLR CSPRPPIPFS FLSLAAAAAA 180 ASIRFPAASR FKFSSSLSKK NMASNPPAQP QAPPKPTRVS LSYEEISKLF SLPIAEAASI 240 LGVCTSVLKR ICRSHGIVRW PYRKLVSGKA GDDTKNSERE KAKELLELSK AAKQKAFSLS 300 GPSAMSSSTS QGAGKSQQGG SKAGGQVSPP GKQNALGGLA LVSQTKGIPT YMDDFKYGFP 360 SSGLSRETMK WWGASDNTDS AGPAKDMSHE SAAHDASKGM TDDELDWGAD EGEGEVDVTA 420 EPSAQLCSLR RKAVDDGRKL LNGETRRGQQ EFCRLNKRQK LVLAQVFGAS LPREWSKLV

Sequence ? help Back to Top

Protein Sequence Length: 479 aa Download sequence Send to blast

MVASSRLRNR KGKKERQAQA QVVMAAHECP SAMRAHVLEV PAGRDVLSCV AQFARRCRRG  60
ALVLGAAGHV VLRGGCTMQI LSLAGCFFPS GAGAGGTAVF LAGPRGTVLG GGVAPGGLVA  120
AGPVVVMLAT QVKSTRARKE PNLSFLAESV PVRRQPPPLR CSPRPPIPFS FLSLAAAAAA  180
ASIRFPAASR FKFSSSLSKK NMASNPPAQP QAPPKPTRVS LSYEEISKLF SLPIAEAASI  240
LGVCTSVLKR ICRSHGIVRW PYRKLVSGKA GDDTKNSERE KAKELLELSK AAKQKAFSLS  300
GPSAMSSSTS QGAGKSQQGG SKAGGQVSPP GKQNALGGLA LVSQTKGIPT YMDDFKYGFP  360
SSGLSRETMK WWGASDNTDS AGPAKDMSHE SAAHDASKGM TDDELDWGAD EGEGEVDVTA  420
EPSAQLCSLR RKAVDDGRKL LNGETRRGQQ EFCRLNKRQK LVLAQVFGAS LPREWSKLV

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462965251

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001140342.1	1e-132	uncharacterized protein LOC100272390
TrEMBL	A0A0A9PF78	1e-142	A0A0A9PF78_ARUDO; Uncharacterized protein
STRING	Pavir.J04809.1.p	1e-136	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6705	32	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G74480.1	9e-10	RWP-RK domain-containing protein