PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462965650
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family B3
Protein Properties Length: 196aa    MW: 22686.7 Da    PI: 5.2412
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462965650genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B343.46.2e-1415106196
                EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                ffk+l     ++++ l+lp kf  +  g  ++++++++l    s   Wev++ +++++++++l++GW++F++  +L+eg  +vF++d  +  + +v++
  462965650  15 FFKIL--LPGMSKNKLRLPSKFE-QVlG--ERRDVKMRLAGaASMPLWEVEV-VSGGDDGVYLGRGWRQFARTYELREGHLLVFRYDTGDVLNVTVSL 106
                88999..77888889*******5.4424..56999*****977779******.7899999*************************9866666666655 PP
2B340.45.2e-131091574288
                TS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
         B3  42 sgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                 g+sW+v+l+   r +++r+ ++ GW +F+ +ngL++gD++ F++++++
  462965650 109 GGKSWTVNLKRgkRARGDRTAFKYGWHQFCVDNGLEVGDTCFFRVIRER 157
                69*******7765556666*************************98764 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100176.90E-1313104No hitNo description
PROSITE profilePS5086311.56113108IPR003340B3 DNA binding domain
SuperFamilySSF1019364.32E-1514104IPR015300DNA-binding pseudobarrel domain
PfamPF023621.0E-1015106IPR003340B3 DNA binding domain
SMARTSM010191.2E-915110IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.3E-1615104IPR015300DNA-binding pseudobarrel domain
CDDcd100179.08E-11102158No hitNo description
SuperFamilySSF1019361.16E-11102156IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.6E-14105157IPR015300DNA-binding pseudobarrel domain
PfamPF023622.7E-10109157IPR003340B3 DNA binding domain
PROSITE profilePS5086310.475110169IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MEQGMADLRL GDFEFFKILL PGMSKNKLRL PSKFEQVLGE RRDVKMRLAG AASMPLWEVE  60
VVSGGDDGVY LGRGWRQFAR TYELREGHLL VFRYDTGDVL NVTVSLRMGG KSWTVNLKRG  120
KRARGDRTAF KYGWHQFCVD NGLEVGDTCF FRVIRERSGI KEEDAEDEQW EWEEEEEDDE  180
HVLKVEVRKK DGAFVA
Cis-element ? help Back to Top
SourceLink
PlantRegMap462965650
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796563.11e-33B3 domain-containing protein Os03g0212300-like
RefseqXP_025796564.11e-33B3 domain-containing protein Os03g0212300-like
SwissprotQ10Q269e-30Y3123_ORYSJ; B3 domain-containing protein Os03g0212300
TrEMBLA0A0D3FFC81e-46A0A0D3FFC8_9ORYZ; Uncharacterized protein
STRINGOBART03G08090.12e-47(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47483264
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53310.12e-07B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]