PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462965737
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family WRKY
Protein Properties Length: 237aa    MW: 25639.6 Da    PI: 8.9288
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462965737genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY103.31.4e-3284141259
                --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                +Dgy+WrKYGqK vk+s +prsYYrCt a+C vkk vers++dp+ v++tYeg+H+h+
  462965737  84 EDGYRWRKYGQKAVKNSSYPRSYYRCTAARCGVKKLVERSQQDPSSVITTYEGQHTHP 141
                8********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.3E-3470143IPR003657WRKY domain
SuperFamilySSF1182901.05E-2875143IPR003657WRKY domain
PROSITE profilePS5081130.44678143IPR003657WRKY domain
SMARTSM007743.3E-3783142IPR003657WRKY domain
PfamPF031063.4E-2684141IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MPPTSSVLSS SSEAGGGGEP RTGRCEKGTP EEEEEENDDD AEEEGSAADR NCKRSKGEKK  60
RGEKKKARLP RVAFMTKSEV DHLEDGYRWR KYGQKAVKNS SYPRSYYRCT AARCGVKKLV  120
ERSQQDPSSV ITTYEGQHTH PSPVGLGGRL GLPRHDDLAA RAMMMTGHLG YGDHGARVPG  180
SLLLLPAGNG VRSPMSTHLV HQQERRASSP LVPAYGGAPG FVPNSAAIGD VKAHERC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-2674143877Probable WRKY transcription factor 4
2lex_A1e-2674143877Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap462965737
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU0586072e-90KU058607.1 UNVERIFIED: Panicum miliaceum WRKY7-like gene, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004961086.11e-63probable WRKY transcription factor 57
TrEMBLK3Z7P83e-62K3Z7P8_SETIT; Uncharacterized protein
STRINGSi022568m4e-63(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62337173
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18170.16e-41WRKY DNA-binding protein 28