PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462965942

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

Dof

Protein Properties

Length: 447aa MW: 48213 Da PI: 9.2414

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462965942	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.1	2.2e-39	156	215	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k l+cprC+s++tkfCy+nny+++qPr+fCk+C+ryWt+GGa+rnvPvG+grrknk++ 462965942 156 PDKVLPCPRCNSMDTKFCYFNNYNVNQPRHFCKNCQRYWTAGGAMRNVPVGAGRRKNKNA 215 78999****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	9.0E-32	146	213	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	7.1E-32	157	214	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.984	160	214	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	162	198	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 447 aa Download sequence Send to blast
MAGIRRASSR SSQDLASSLT CINNLRFVSF LASSSERKQA SRREKPSKQT REGSHLSFRF 60 EGGRGSEMGE CRGGADCLIK LFGTTIPVPE ACDAKDLQYS GSSSSTESDA KENTPQDNSD 120 PPPQPEVVDA EDPKSSPESQ QPGDDEANQK EKLKKPDKVL PCPRCNSMDT KFCYFNNYNV 180 NQPRHFCKNC QRYWTAGGAM RNVPVGAGRR KNKNAVAASH FLQLRPRRAG PGPRRAGTST 240 GSEGSIKRND NTLGAIKEKV TVEKPANGVQ HPAATMNGAA MWPPYSCAPP QAYYPPGIAI 300 PIYPAVPGYW GCMVPGGWSL PWPVQSPTQG LSSPTSAPSV SSGADSLTLG KHAREGDEGR 360 SHESGKVWAP KTIRIDDADE VAKSSILSLI GIRGDKQSTD MDGRKHGTIF ELKHDAKTAK 420 QAMITSSPLL HTNPVALTRS LTFQEGS

Sequence ? help Back to Top

Protein Sequence Length: 447 aa Download sequence Send to blast

MAGIRRASSR SSQDLASSLT CINNLRFVSF LASSSERKQA SRREKPSKQT REGSHLSFRF  60
EGGRGSEMGE CRGGADCLIK LFGTTIPVPE ACDAKDLQYS GSSSSTESDA KENTPQDNSD  120
PPPQPEVVDA EDPKSSPESQ QPGDDEANQK EKLKKPDKVL PCPRCNSMDT KFCYFNNYNV  180
NQPRHFCKNC QRYWTAGGAM RNVPVGAGRR KNKNAVAASH FLQLRPRRAG PGPRRAGTST  240
GSEGSIKRND NTLGAIKEKV TVEKPANGVQ HPAATMNGAA MWPPYSCAPP QAYYPPGIAI  300
PIYPAVPGYW GCMVPGGWSL PWPVQSPTQG LSSPTSAPSV SSGADSLTLG KHAREGDEGR  360
SHESGKVWAP KTIRIDDADE VAKSSILSLI GIRGDKQSTD MDGRKHGTIF ELKHDAKTAK  420
QAMITSSPLL HTNPVALTRS LTFQEGS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462965942

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU956784	5e-89	EU956784.1 Zea mays clone 1573856 hypothetical protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004983151.1	1e-179	cyclic dof factor 1
TrEMBL	A0A1D8F0I7	1e-179	A0A1D8F0I7_9POAL; Dof protein
STRING	Si035787m	1e-179	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2099	37	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62430.1	4e-54	cycling DOF factor 1