PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462966052
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family bZIP
Protein Properties Length: 230aa    MW: 25089.5 Da    PI: 5.8556
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462966052genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_142.31.6e-1370128462
                XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
     bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 
                +k+ rr ++NR +A +sR+RKk +i+eLe+k+k Leae ++L   l+ +  e  +l+++
  462966052  70 SKKKRRQMRNRDSAMKSRERKKTYIKELETKSKYLEAECRRLSYALQCYAAENMALRQS 128
                79****************************************99999888888777775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.1E-666131IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.05969127IPR004827Basic-leucine zipper domain
PfamPF001703.2E-1171128IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.19E-1171129No hitNo description
Gene3DG3DSA:1.20.5.1705.7E-1371130No hitNo description
CDDcd147042.26E-1472123No hitNo description
PROSITE patternPS0003607489IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0030968Biological Processendoplasmic reticulum unfolded protein response
GO:0005634Cellular Componentnucleus
GO:0005789Cellular Componentendoplasmic reticulum membrane
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MQEGDAEVGG AVDGVSVEEF FDALYDGGEG EEKGKESEAG GISDGSSGRE EEVLTPEAEK  60
VEVDGDDPVS KKKRRQMRNR DSAMKSRERK KTYIKELETK SKYLEAECRR LSYALQCYAA  120
ENMALRQSVL KDRPVGAPTA MQESAVLTET LPLVSLLWLV SIVCLFLMPG LPNRSPAAPR  180
SSGRDLGTVA GKTSSEHLET PDLILHGRRC KGTRAKIKLS TLPFHTVAAC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17074KKKRR
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in endoplasmic reticulum (ER) stress response (PubMed:21223397, PubMed:22050533, PubMed:22199238). Acts downstream of the ER stress sensors IRE1, BZIP39 and BZIP60 to activate BiP chaperone genes (PubMed:22050533, PubMed:22199238). {ECO:0000269|PubMed:21223397, ECO:0000269|PubMed:22050533, ECO:0000269|PubMed:22199238}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00019PBMTransfer from AT1G42990Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap462966052
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By dithiothreitol-induced endoplasmic reticulum (ER) stress response (PubMed:22050533, PubMed:21223397). Induced by salt stress (PubMed:22050533). {ECO:0000269|PubMed:21223397, ECO:0000269|PubMed:22050533}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP0331920.0KP033192.1 Eleusine coracana cultivar GPU28 bZIP transcription factor (bZIP60) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004965858.11e-133bZIP transcription factor 50
SwissprotQ69XV01e-101BZP50_ORYSJ; bZIP transcription factor 50
TrEMBLA0A0C5KQY61e-132A0A0C5KQY6_ELECO; BZIP transcription factor
STRINGSi006978m1e-132(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69343750
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G42990.17e-15basic region/leucine zipper motif 60
Publications ? help Back to Top
  1. Wakasa Y, et al.
    Expression of ER quality control-related genes in response to changes in BiP1 levels in developing rice endosperm.
    Plant J., 2011. 65(5): p. 675-89
    [PMID:21223397]
  2. Lu SJ, et al.
    Conservation of IRE1-regulated bZIP74 mRNA unconventional splicing in rice (Oryza sativa L.) involved in ER stress responses.
    Mol Plant, 2012. 5(2): p. 504-14
    [PMID:22199238]