PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462966309
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family GATA
Protein Properties Length: 443aa    MW: 46778.9 Da    PI: 6.898
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462966309genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA33.94.4e-113483701133
       GATA  11 lWRrgpdgnktLCnaCGlyyrkk 33 
                 WR gp+g+ tLCnaCG++++  
  462966309 348 KWRAGPRGPGTLCNACGIRFKNG 370
                6*******************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004010.0024341386IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.0E-6348395No hitNo description
PfamPF003209.2E-9348371IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.1E-6349370IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.33E-8349393No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 443 aa     Download sequence    Send to blast
MRKPVPFLKD EDLEKGLDDL ADGAGFLAAG LCCPNDLLDD VMDCFVAPSV DDGFLPSRLV  60
ADGRPAGDGD GGGTKDLLDV VSAPMLAAAN ATPGGGADLP SSRGVPHDFK DMDFDVDMFF  120
ADDAGCGVGV SNVSCLAPVT VALPVASPAN PPGAVDGVVH DRALTCPARG LDVSGALSGV  180
VPGCTPPLPV PGTDDFCGAL DGVIVPYCAP AYVCSAQYGF STDSAPSLLL RGPADRFVPD  240
STTPQYALAS KPSSSGSGCV SSMTWETESP ARISPPRAWV VPRKKKRHQP ITRRNHFWLP  300
KSHPYSFAPA NAKPRDTNPL SLKSLGDSVS GIGNGTDSIR RLQRPEAKWR AGPRGPGTLC  360
NACGIRFKNG KLFEEYRPST SPSFQSDKHS NRHRKVVKLR ERKALLSRMP DDDKKNVLAL  420
PPRLVIAGSS VDVENFVTEQ GHQ
Cis-element ? help Back to Top
SourceLink
PlantRegMap462966309
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP16076913
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45050.11e-19GATA transcription factor 2