PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462966357
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family ERF
Protein Properties Length: 274aa    MW: 29248.4 Da    PI: 7.7776
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462966357genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.72.5e-174696256
        AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56
               +y+GVr+++ +gr++AeIrdp     +  r +lg+f+tae+Aa a++ a+++++g+
  462966357 46 RYRGVRRRP-WGRFAAEIRDPM----SkERRWLGTFDTAEQAACAYDVAARAMRGN 96
               69*******.**********84....35999**********************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.87E-2745103No hitNo description
PROSITE profilePS5103223.06446103IPR001471AP2/ERF domain
SMARTSM003806.3E-3546109IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.4E-3146104IPR001471AP2/ERF domain
PfamPF008471.1E-104695IPR001471AP2/ERF domain
SuperFamilySSF541715.56E-2246104IPR016177DNA-binding domain
PRINTSPR003672.6E-94758IPR001471AP2/ERF domain
PRINTSPR003672.6E-96985IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0009735Biological Processresponse to cytokinin
GO:0009880Biological Processembryonic pattern specification
GO:0010084Biological Processspecification of organ axis polarity
GO:0048825Biological Processcotyledon development
GO:0051726Biological Processregulation of cell cycle
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MDEAANAHLY GHVHAHHHHH HHHHRSKRAV AADDDGDAPS PKGAARYRGV RRRPWGRFAA  60
EIRDPMSKER RWLGTFDTAE QAACAYDVAA RAMRGNKART NFPLHATAGC WPWGPAPPQA  120
LLMAGSSNSA TNGCRLVPHA VGHGQGGQPR PRPAAAATSA FVASLPRAVD DDMWGGLLQS  180
EPPDAGLLQD ALHDFYPSTR PPRGTSCHHK RDSDTGIAAA AFHPNDADGF DLEDGGGDYT  240
MTTPQGLLGD VIQFPAFVQL VSGPSAAALC GRRG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A8e-2047109669ATERF1
3gcc_A8e-2047109669ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap462966357
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008678756.12e-71ethylene-responsive transcription factor ESR2
TrEMBLA0A3L6RUV02e-73A0A3L6RUV0_PANMI; Ethylene-responsive transcription factor ESR2-like
STRINGGRMZM2G120401_P017e-71(Zea mays)
STRINGGRMZM2G165257_P017e-71(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP72633050
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12980.13e-20ERF family protein