PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462966862

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

LBD

Protein Properties

Length: 138aa MW: 14349.3 Da PI: 8.7055

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462966862	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	124.9	3.9e-39	33	123	1	90
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +C aCk+lrrkC+++C++apyf ++q +++fa+vhk+FGasnv+kll+++++e+r da+ +++yeA+ar+rdPvyG+v++i++lqqql+ 462966862 33 PCGACKFLRRKCVNGCIFAPYFDSDQgAAHFAAVHKVFGASNVSKLLHQIRPEKRVDAVVTVCYEAQARLRDPVYGCVSHIFALQQQLHDD 123 7*********************9989*********************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	21.998	32	134	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.3E-38	33	122	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010089	Biological Process	xylem development
GO:0010199	Biological Process	organ boundary specification between lateral organs and the meristem

Sequence ? help Back to Top
Protein Sequence Length: 138 aa Download sequence Send to blast
MSTCSSVMSG GGAGGVDGSS GNGGAGGGGP GGPCGACKFL RRKCVNGCIF APYFDSDQGA 60 AHFAAVHKVF GASNVSKLLH QIRPEKRVDA VVTVCYEAQA RLRDPVYGCV SHIFALQQQL 120 HDDRIVVSSL GFLMTRRS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	6e-37	29	121	7	98	LOB family transfactor Ramosa2.1
5ly0_B	6e-37	29	121	7	98	LOB family transfactor Ramosa2.1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the positive regulation of tracheary element (TE) differentiation. Involved in a positive feedback loop that maintains or promotes NAC030/VND7 expression that regulates TE differentiation-related genes. {ECO:0000269\|PubMed:19088331}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462966862

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT036180	1e-104	BT036180.1 Zea mays full-length cDNA clone ZM_BFb0099M02 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009400358.1	3e-52	PREDICTED: LOB domain-containing protein 18-like
Refseq	XP_011094569.1	1e-52	LOB domain-containing protein 18
Swissprot	O81323	1e-47	LBD30_ARATH; LOB domain-containing protein 30
TrEMBL	A0A151TBP8	2e-52	A0A151TBP8_CAJCA; LOB domain-containing protein 18
TrEMBL	A0A1E5UT08	2e-51	A0A1E5UT08_9POAL; LOB domain-containing protein 18
STRING	Pavir.Ia02614.1.p	3e-52	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3346	37	82

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00220.1	8e-50	LBD family protein

Publications ? help Back to Top
Rast-Somssich MI, et al. The Arabidopsis JAGGED LATERAL ORGANS (JLO) gene sensitizes plants to auxin. J. Exp. Bot., 2017. 68(11): p. 2741-2755 [PMID:28472464] Liu C,Yu H,Li L SUMO modification of LBD30 by SIZ1 regulates secondary cell wall formation in Arabidopsis thaliana. PLoS Genet., 2019. 15(1): p. e1007928 [PMID:30657769]