PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462966926

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

C2H2

Protein Properties

Length: 85aa MW: 9294.58 Da PI: 9.5617

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462966926	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.9	7.8e-05	2	25	1	23
EEETTTT.EEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCg.ksFsrksnLkrHirtH 23 y+C+ C+ k+Fs s+L++H + + 462966926 2 YVCNRCNlKHFSVLSDLRTHEKHC 25 9*******************9976 PP
2	zf-C2H2	13.7	0.00019	33	49	5	21
TTTEEESSHHHHHHHHH CS zf-C2H2 5 dCgksFsrksnLkrHir 21 Cg+sFsrk+ L+ H+ 462966926 33 SCGTSFSRKDKLVGHLA 49 6**************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 85 aa Download sequence Send to blast
MYVCNRCNLK HFSVLSDLRT HEKHCGDHRW LCSCGTSFSR KDKLVGHLAL FAGHHPAVPL 60 DTTRSANGGK RTSTSAASTP APPHL

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may be involved in aluminum tolerance. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462966926

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK063290	1e-54	AK063290.1 Oryza sativa Japonica Group cDNA clone:001-113-E02, full insert sequence.
GenBank	AP004587	1e-54	AP004587.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0543D10.
GenBank	AP005544	1e-54	AP005544.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0604E01.
GenBank	AP014964	1e-54	AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBank	CP012616	1e-54	CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020402817.1	4e-39	protein SENSITIVE TO PROTON RHIZOTOXICITY 2
Swissprot	Q943I6	7e-28	STOP1_ORYSJ; Zinc finger protein STOP1 homolog
TrEMBL	A0A1D6KM37	8e-38	A0A1D6KM37_MAIZE; C2H2 and C2HC zinc fingers superfamily protein
TrEMBL	A0A317Y329	2e-38	A0A317Y329_MAIZE; Zinc finger protein STOP1
STRING	Sb07g023890.1	1e-37	(Sorghum bicolor)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34370.2	9e-30	C2H2 family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]