PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462967441

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

ZF-HD

Protein Properties

Length: 76aa MW: 7208.96 Da PI: 6.2152

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462967441	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	58	2.2e-18	37	69	3	35
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegee 35 +vrY+eCl+NhAa+lGgh+vDGCgEfmp g+ 462967441 37 EVRYHECLRNHAAALGGHVVDGCGEFMPGAGAG 69 79**************************86554 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04770	4.6E-15	38	70	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	2.0E-10	38	74	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	1.9E-15	39	69	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	18.28	40	76	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain

Sequence ? help Back to Top
Protein Sequence Length: 76 aa Download sequence Send to blast
MGTPPAAAVP RALPPTAAAS SSSGNGAGAS AAAAPPEVRY HECLRNHAAA LGGHVVDGCG 60 EFMPGAGAGD DALKSN

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462967441

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FP096968	2e-34	FP096968.1 Phyllostachys edulis cDNA clone: bphyst021i04, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025810260.1	4e-21	zinc-finger homeodomain protein 6-like
Swissprot	B8AX53	1e-15	ZHD6_ORYSI; Zinc-finger homeodomain protein 6
TrEMBL	A0A2S3H9A7	9e-20	A0A2S3H9A7_9POAL; Uncharacterized protein
TrEMBL	A0A2T7E9Z6	1e-19	A0A2T7E9Z6_9POAL; Uncharacterized protein
STRING	Pavir.Ca01004.1.p	9e-20	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP815	35	145

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75240.1	6e-12	homeobox protein 33