PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462967464
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family MYB_related
Protein Properties Length: 338aa    MW: 35256.3 Da    PI: 8.1783
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462967464genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding414.4e-13181225347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +W++eE+ +++ + ++lG+g+W+ I+r   ++Rt+ q+ s+ qk+
        462967464 181 PWSEEEHRQFLVGLEKLGKGDWRGISRSYVTTRTPTQVASHAQKF 225
                      8******************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501588.5325267IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129417.031174230IPR017930Myb domain
SuperFamilySSF466896.32E-17175231IPR009057Homeodomain-like
TIGRFAMsTIGR015576.4E-17177229IPR006447Myb domain, plants
SMARTSM007171.0E-9178228IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.5E-10178221IPR009057Homeodomain-like
CDDcd001673.98E-9181226No hitNo description
PfamPF002492.3E-10181224IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
LLADQQPVAV APPTGTALVD TLASTHLSQV ASPSAAKGTV QIPSIYSHSM ARKCSHCGNY  60
GHNSRTCSLG HRETIMLCEA GSNNGGGGGG SSGSGLRLFG VQVHVGAGGG AAASMMKKSY  120
SMDCLQLAAA APGCSIVSPS SSSSSSMLLS IDEGLERAAT NGYLSDGPHG RVVQERKKGV  180
PWSEEEHRQF LVGLEKLGKG DWRGISRSYV TTRTPTQVAS HAQKFFLRQS SMGKKKRRSS  240
LFDMVPICEN GARNSDQLNS AENASTSLSL NVPRDGFSDS RPAFDLNCTE EDDNRSDFSS  300
ASGAGTGTLR PSSHGHGHGL HCSLLELGMS LSTPSIGT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1233237KKKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMap462967464
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002455906.11e-117transcription factor MYBS3
TrEMBLA0A0A9K2J01e-132A0A0A9K2J0_ARUDO; Uncharacterized protein
STRINGSb03g027120.11e-117(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP49323066
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56840.14e-48MYB_related family protein