PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462967626
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family Nin-like
Protein Properties Length: 185aa    MW: 21463.2 Da    PI: 10.3234
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462967626genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK82.34.7e-2657107252
     RWP-RK   2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                +k +++e+++ +F++pik+AA+eL+v+lTvLK++CR++ I+RWPhRk+ksl
  462967626  57 KKALTFEQVALHFNMPIKQAARELNVGLTVLKKRCRELHIPRWPHRKVKSL 107
                789**********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151916.80243128IPR003035RWP-RK domain
PfamPF020427.3E-2260107IPR003035RWP-RK domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0051302Biological Processregulation of cell division
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
ELEALSDIED FTNIWPQIEY VYQKNKEGGC KKGSKLECGR VKRGKKMLQR QVGGLDKKAL  60
TFEQVALHFN MPIKQAAREL NVGLTVLKKR CRELHIPRWP HRKVKSLQTL INNVQELGHE  120
EGHLTRTVVE KLQQTKKLME ESPAMMLDAE TKVLRQACFK ENFKRKRLMG HGKCPWMALI  180
SDAER
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462967626
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822796.11e-56protein RKD1
SwissprotQ9M9U93e-35RKD1_ARATH; Protein RKD1
TrEMBLA0A2S3GTB43e-55A0A2S3GTB4_9POAL; Uncharacterized protein
TrEMBLA0A2T7FBK33e-55A0A2T7FBK3_9POAL; Uncharacterized protein
TrEMBLA0A3L6QLV71e-55A0A3L6QLV7_PANMI; Protein RKD3-like
STRINGPavir.Aa00708.1.p4e-55(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45903365
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18790.11e-37RWP-RK domain-containing protein