PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462967745
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family B3
Protein Properties Length: 133aa    MW: 14814 Da    PI: 11.2757
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462967745genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B386.81.8e-2712113199
                EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS..-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesg..rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                f+kv tpsdv+k++rlv+pk+fae+h    g   + ++ l + d +g   +W+++++y+++s++yv+tkGW+++v++++L +gD+v F    r++++l++
  462967745  12 FEKVVTPSDVGKLNRLVVPKHFAEKHlpllGPAARAGTVLCFHDARGghATWRFRYSYWGSSQSYVMTKGWSRYVRDKRLAAGDTVSFC---RDGARLFL 108
                99***************************9666778899*****99999***************************************9...45566777 PP

                EEE-S CS
         B3  95 kvfrk 99 
                  +r+
  462967745 109 DCRRR 113
                77765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.2E-349118IPR015300DNA-binding pseudobarrel domain
CDDcd100172.30E-2510104No hitNo description
SuperFamilySSF1019362.75E-2811116IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.13912114IPR003340B3 DNA binding domain
PfamPF023624.0E-2412113IPR003340B3 DNA binding domain
SMARTSM010191.8E-2112118IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 133 aa     Download sequence    Send to blast
METGGGGVER LFEKVVTPSD VGKLNRLVVP KHFAEKHLPL LGPAARAGTV LCFHDARGGH  60
ATWRFRYSYW GSSQSYVMTK GWSRYVRDKR LAAGDTVSFC RDGARLFLDC RRRVKRPSIG  120
RAGARRATTT SPC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A2e-4091205117B3 domain-containing transcription factor NGA1
5os9_B2e-4091205117B3 domain-containing transcription factor NGA1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap462967745
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021304886.11e-52B3 domain-containing protein Os06g0107800-like
SwissprotQ5VS551e-50Y6078_ORYSJ; B3 domain-containing protein Os06g0107800
TrEMBLA0A2T7E3W72e-51A0A2T7E3W7_9POAL; Uncharacterized protein
STRINGPavir.Db02478.1.p1e-53(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP129472934
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.11e-41B3 family protein