PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462967941

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

bHLH

Protein Properties

Length: 350aa MW: 38253 Da PI: 10.684

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462967941	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14.3	7.4e-05	122	163	2	47
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekA 47 + + erE+ Rd++N+ f eL ++l + +++s+ Ka++L A 462967941 122 KNHKAEREKLKRDQLNDLFLELSSMLDLD-RQNSG---KASVLGDA 163 677899*******************9886.24444...45555555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	1.4E-6	118	189	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	10.874	120	170	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	7.07E-10	121	184	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	0.0075	126	176	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 350 aa Download sequence Send to blast
MFGWVAATRS LRVLAALLFP FPLASSLPLP RTTLRSRLLP CFLSSRELPS PLPSRQPPPG 60 AARSPARQTG RGPRSAVTEE NNLVMVADTE SSDSLPGSSN ATADKPINGP LDQRSQERIP 120 KKNHKAEREK LKRDQLNDLF LELSSMLDLD RQNSGKASVL GDAARVLRDL ITQVESLRKE 180 QSALLAERQY VSSEKNELLE ENTTIKARIS ELQNDLLTRM GNNSLNLSSL GMSHTMANAT 240 NPGLATQPMQ HQIWSSIPNL STVAMTHSTN TVSPLHSQQH RPAAGQVHAS RPQELQLFPG 300 TSSSPERESS QLRSNPASTS SLTDSLPGRL QLSLPQSSQE GSSRRERKNG

Sequence ? help Back to Top

Protein Sequence Length: 350 aa Download sequence Send to blast

MFGWVAATRS LRVLAALLFP FPLASSLPLP RTTLRSRLLP CFLSSRELPS PLPSRQPPPG  60
AARSPARQTG RGPRSAVTEE NNLVMVADTE SSDSLPGSSN ATADKPINGP LDQRSQERIP  120
KKNHKAEREK LKRDQLNDLF LELSSMLDLD RQNSGKASVL GDAARVLRDL ITQVESLRKE  180
QSALLAERQY VSSEKNELLE ENTTIKARIS ELQNDLLTRM GNNSLNLSSL GMSHTMANAT  240
NPGLATQPMQ HQIWSSIPNL STVAMTHSTN TVSPLHSQQH RPAAGQVHAS RPQELQLFPG  300
TSSSPERESS QLRSNPASTS SLTDSLPGRL QLSLPQSSQE GSSRRERKNG

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462967941

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025826529.1	1e-124	transcription factor BHLH062-like isoform X1
TrEMBL	A0A0A9CGL0	1e-133	A0A0A9CGL0_ARUDO; Uncharacterized protein
STRING	Pavir.Ha00418.1.p	1e-123	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12959	21	24

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47640.3	5e-34	bHLH family protein