PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462968374
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family Nin-like
Protein Properties Length: 828aa    MW: 90604 Da    PI: 6.9047
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462968374genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK75.65.7e-24477526152
     RWP-RK   1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                aek++sl++l++yF++++kdAA++Lgvc+T+  riCRq+GI RWP+Rkik++
  462968374 477 AEKTVSLQVLRQYFAGSLKDAARSLGVCPTT--RICRQHGITRWPSRKIKKV 526
                5899**************************9..*****************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151914.3467546IPR003035RWP-RK domain
PfamPF020423.5E-20480526IPR003035RWP-RK domain
SuperFamilySSF542771.57E-21681777No hitNo description
Gene3DG3DSA:3.10.20.2408.9E-25688772No hitNo description
PROSITE profilePS5174521.781691774IPR000270PB1 domain
SMARTSM006664.9E-20691774IPR000270PB1 domain
PfamPF005649.3E-16692771IPR000270PB1 domain
CDDcd064072.74E-40692772No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 828 aa     Download sequence    Send to blast
MEGGGDPRPG VSLVRSPSEG DLDLLEQLLS GDNAWLEVAS RSPNSLASPP PAAFFAADAT  60
ATTVTATAAN TGWTGVASPS SVRERFNQAL SYIKETQSDG DVLVQLWVPV KGDDGQLVLT  120
TSGQPFTLDQ RSDSLIRFRE VSTKYHFSAD VTSGTTPGLP GRVFIGRLPE WSPDVRYFTS  180
YEYPRVNHAQ YLDVHGTMGL PVFEKGSYSC LGVIELIMTR QKLNFTPELN AICSALQVGY  240
LPLTVSESSE LAVNLRSTEV SSIPRIKFSS ASYKDALPEI LEVLKAACLI HKLPLAQTWV  300
TCAQQGKRGS RHSDENYRYC ISTIDEACFV NEPQMQNFHE ACSEHHLLRG QGVAGKAFTT  360
NQPCFLPDIG SSTKLDYPLS HHAKIFNLKG AVAIRLRCTR TGTADFGKNK VEELSFGDNS  420
RDRAGEASWT SVAETSQQES ELAALRMHGM LSPDGQGPST SGVQTAEGSK AKRRTKAEKT  480
VSLQVLRQYF AGSLKDAARS LGVCPTTRIC RQHGITRWPS RKIKKVDHSL KKLQQIIDSV  540
HGAETAFQLN TLYKDLTNTS ISSDNNLSGS ITVPPMNKSN LTDKHQHHSN VPSTSHSHSS  600
CGHNSDSSPS CSGGAIKHAP QVVIDLMKSG NPVESSTIQP LQTENTSLYE HFSVQEASIN  660
LLQDVTEKAN GLQHYSQSPT SPKQNSNADS NMRVKATFGS EKVRFRLKPE CNFQELKQEL  720
AQRLSIVDTN SLVLKYLDDD SEWVLMTCDA DLQECLHVYK IADIQTIKIS IHLIANPATR  780
VTNGHTAITV SSEDITAIPP RLSPGVYEAL LLKIQFFCSS YLGLELEI
Cis-element ? help Back to Top
SourceLink
PlantRegMap462968374
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004957563.10.0protein NLP1 isoform X2
RefseqXP_004957564.10.0protein NLP1 isoform X2
TrEMBLA0A3L6TG430.0A0A3L6TG43_PANMI; Protein NLP1 isoform X2
STRINGSi028915m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55543852
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G20640.21e-121Nin-like family protein