PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462968383
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family MYB
Protein Properties Length: 340aa    MW: 37313.1 Da    PI: 6.5075
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462968383genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.45.1e-161564148
                     TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg..tWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd  lv+ ++++Gg+  +W+  ++  g++R++k+c++rw +yl
        462968383 15 KGPWTEEEDRTLVEHIQRHGGHvsSWRNLPKAAGLNRCGKSCRLRWTNYL 64
                     79**********************************************97 PP
2Myb_DNA-binding54.92e-1770114147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg++T +E+ l++ ++++lG++ W+tIa ++  gRt++++k++w+++
        462968383  70 RGNFTDDEERLIIALHAELGNK-WSTIATHLE-GRTDNEIKNYWNTH 114
                      89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.1271064IPR017930Myb domain
SuperFamilySSF466895.39E-2812111IPR009057Homeodomain-like
SMARTSM007176.4E-111466IPR001005SANT/Myb domain
PfamPF002491.5E-141564IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.2E-221671IPR009057Homeodomain-like
CDDcd001673.06E-91764No hitNo description
PROSITE profilePS5129427.54965119IPR017930Myb domain
SMARTSM007174.0E-1669117IPR001005SANT/Myb domain
PfamPF002493.0E-1570114IPR001005SANT/Myb domain
CDDcd001672.67E-1272115No hitNo description
Gene3DG3DSA:1.10.10.601.9E-2672111IPR009057Homeodomain-like
Gene3DG3DSA:1.25.10.108.2E-4112224IPR011989Armadillo-like helical
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MGRSRCCCHD AGVKKGPWTE EEDRTLVEHI QRHGGHVSSW RNLPKAAGLN RCGKSCRLRW  60
TNYLRPDIKR GNFTDDEERL IIALHAELGN KWSTIATHLE GRTDNEIKNY WNTHIRKKLT  120
RMGVDPVTHQ RLPPDDLLLA SSSASSPEAL LRAAASLRDL DTTLRQAQVL QLLLQLVGPG  180
SNTGPMSAAA AALMGSGYLP AAGNALLNAS GVIAPNLQNQ MMNVFSQAMN YNQPPAAGRY  240
PAANVAEQGM LAHHQYVKSS SAPSPCTSND VEPADQYCKA TAALEQRPAY PPQEVAAEVD  300
LPPAVQGFTD LLEPTEMPSL YSMEEEDAFW KEMLDSSFRL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-27151197108B-MYB
1h8a_C2e-271511927128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462968383
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM1569040.0AM156904.1 Zea mays mRNA for transcription factor MYB2 (myb2 gene).
GenBankBT0543980.0BT054398.1 Zea mays full-length cDNA clone ZM_BFc0030L21 mRNA, complete cds.
GenBankHQ8586910.0HQ858691.1 Zea mays clone UT1147 ZmMYB2 transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001105856.11e-124transcription factor MYB2
SwissprotQ9S9Z25e-64MYB93_ARATH; Transcription factor MYB93
TrEMBLA0A3L6Q4P11e-124A0A3L6Q4P1_PANMI; Transcription factor MYB39
STRINGGRMZM2G081557_P011e-122(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62652955
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16770.28e-67myb domain protein 9
Publications ? help Back to Top
  1. Gibbs DJ,Coates JC
    AtMYB93 is an endodermis-specific transcriptional regulator of lateral root development in arabidopsis.
    Plant Signal Behav, 2014. 9(10): p. e970406
    [PMID:25482809]