PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462968785
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family MYB
Protein Properties Length: 221aa    MW: 24713.9 Da    PI: 10.4933
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462968785genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding36.98.4e-121868148
                     TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqkyl 48
                     +g W++eEde+l++ + ++G g  ++ ++ ++ + + R++k+c++rw +yl
        462968785 18 KGLWSPEEDEKLYNHIIRYGVGhySPLLVRSCAPgLQRCGKSCRLRWINYL 68
                     678**********************************************97 PP
2Myb_DNA-binding48.61.8e-1574118147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg+++++E++ +v +++ lG++ W+ Ia++++ gRt++++k++w++ 
        462968785  74 RGSFSQQEEDAIVGLHEILGNR-WSQIASHLP-GRTDNEIKNFWNSC 118
                      899*******************.*********.***********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.6E-181371IPR009057Homeodomain-like
PROSITE profilePS5129410.4661368IPR017930Myb domain
SuperFamilySSF466893.56E-2616115IPR009057Homeodomain-like
SMARTSM007177.1E-71770IPR001005SANT/Myb domain
PfamPF002496.6E-101868IPR001005SANT/Myb domain
CDDcd001678.90E-92168No hitNo description
PROSITE profilePS5129424.51769123IPR017930Myb domain
Gene3DG3DSA:1.10.10.609.3E-2672123IPR009057Homeodomain-like
SMARTSM007172.2E-1473121IPR001005SANT/Myb domain
PfamPF002498.3E-1474118IPR001005SANT/Myb domain
CDDcd001671.69E-1076116No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MGRHPASSGG GVQQKLRKGL WSPEEDEKLY NHIIRYGVGH YSPLLVRSCA PGLQRCGKSC  60
RLRWINYLRP DLKRGSFSQQ EEDAIVGLHE ILGNRWSQIA SHLPGRTDNE IKNFWNSCLK  120
KKLRQRGIDP STHKPISAAA ATSEDQKQPA DGGFIALKQQ QQQQGVDPRR RRKGRSRRAN  180
NGEAPLHWGS DSKIDGYGEA LENKEAIKAV ENGGPGAIRM F
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-26161235108B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1118124LKKKLRQ
Functional Description ? help Back to Top
Source Description
UniProtPossible transcription activator in response to an external signal. May be involved in the regulation of flavonoid biosynthesis.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462968785
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1117821e-121AK111782.1 Oryza sativa Japonica Group cDNA clone:J023084H22, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003569634.18e-86myb-related protein Hv33
SwissprotP200272e-68MYB3_HORVU; Myb-related protein Hv33
TrEMBLI1HQR22e-84I1HQR2_BRADI; Uncharacterized protein
STRINGBRADI2G47590.13e-85(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23273391
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01680.31e-65myb domain protein 55