PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462968824

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

LBD

Protein Properties

Length: 209aa MW: 22155.8 Da PI: 6.9509

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462968824	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	84	2.2e-26	17	89	27	99
DUF260 27 pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +++fa+vhk+FGasnv+kll+++++e+r da+ +++yeA+ar+rdPvyG+v++i++lqqq+++l++el+ +++ 462968824 17 AAHFAAVHKVFGASNVSKLLHQIRPEKRVDAVVTVCYEAQARLRDPVYGCVAHIFALQQQIMNLQSELSFMQS 89 579*****************************************************************99886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	14.179	1	91	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	6.6E-26	17	88	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 209 aa Download sequence Send to blast
MSTCSSVMSG GGAGGGAAHF AAVHKVFGAS NVSKLLHQIR PEKRVDAVVT VCYEAQARLR 60 DPVYGCVAHI FALQQQIMNL QSELSFMQST LATMELPQQQ QAGQFPVQPQ MPVTAGAFSV 120 SNLPSSSTIL PNTVDLSALV FDNQHQQQQQ LQQNQYAAGM GASSGEASGS GTDTFTGDGT 180 DLHALARALL NRQHVRVAGT EPPQPRAHQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	3e-21	20	91	40	111	LOB family transfactor Ramosa2.1
5ly0_B	3e-21	20	91	40	111	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462968824

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT036180	3e-70	BT036180.1 Zea mays full-length cDNA clone ZM_BFb0099M02 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021307456.1	3e-55	LOB domain-containing protein 30
TrEMBL	A0A1B6QL50	6e-54	A0A1B6QL50_SORBI; Uncharacterized protein
STRING	BRADI1G68170.1	3e-52	(Brachypodium distachyon)
STRING	GRMZM2G076327_P01	2e-52	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3346	37	82

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45420.1	4e-31	LOB domain-containing protein 18