PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462968843
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family NF-YB
Protein Properties Length: 259aa    MW: 27461.2 Da    PI: 8.7029
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462968843genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB179.92.3e-5688180193
      NF-YB   1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrel 93 
                vreqdrflPian+srimkk++Pan+ki+kdaketvqecvsefisf+tseasdkcqrekrktingddllwa+atlGfedy+eplkvyl+kyre+
  462968843  88 VREQDRFLPIANISRIMKKAIPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIEPLKVYLQKYREC 180
                69*****************************************************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.103.8E-5287179IPR009072Histone-fold
SuperFamilySSF471132.95E-3891179IPR009072Histone-fold
PfamPF008084.8E-2894158IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006152.8E-22122140No hitNo description
PROSITE patternPS006850125141IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006152.8E-22141159No hitNo description
PRINTSPR006152.8E-22160178No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
PPGPPSLLQP SDLPLAASPL PCSLARFPTS LPALPARARS PPRLLPVARA PRLYKDHRMS  60
DGPTSPGGGG GSHESGSPRG GGSGGGGVRE QDRFLPIANI SRIMKKAIPA NGKIAKDAKE  120
TVQECVSEFI SFITSEASDK CQREKRKTIN GDDLLWAMAT LGFEDYIEPL KVYLQKYREC  180
SVIILDCLSK LMLLGSSFLD DQGDSKLTAK AGDGSIKKDV LGHGGASSSG PQGMNQQGAY  240
NQGMGYMQPH GYHNGDISN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1n1j_A4e-4887179193NF-YB
4awl_B3e-4887179294NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A3e-4887179294NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00300DAPTransfer from AT2G38880Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap462968843
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0410971e-126BT041097.1 Zea mays full-length cDNA clone ZM_BFc0174L17 mRNA, complete cds.
GenBankKJ7283391e-126KJ728339.1 Zea mays clone pUT6620 CCAAT-DR1 transcription factor (CADR15) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004961814.14e-96nuclear transcription factor Y subunit B
RefseqXP_004961815.14e-96nuclear transcription factor Y subunit B
RefseqXP_012700237.14e-96nuclear transcription factor Y subunit B
SwissprotP252093e-94NFYB_MAIZE; Nuclear transcription factor Y subunit B
TrEMBLK3ZA339e-95K3ZA33_SETIT; Uncharacterized protein
STRINGSi023400m1e-95(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20138331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53340.11e-62nuclear factor Y, subunit B10
Publications ? help Back to Top
  1. Li XY, et al.
    Evolutionary variation of the CCAAT-binding transcription factor NF-Y.
    Nucleic Acids Res., 1992. 20(5): p. 1087-91
    [PMID:1549471]