PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462968898
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family C2H2
Protein Properties Length: 515aa    MW: 56688.7 Da    PI: 5.7751
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462968898genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.82.2e-06279300223
                EETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                 C +Cgk F+r  nL+ H+r H
  462968898 279 FCLICGKGFKRDANLRMHMRGH 300
                5*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.03E-5276303No hitNo description
PROSITE profilePS5015711.552278305IPR007087Zinc finger, C2H2
SMARTSM003550.012278300IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280280300IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.609.3E-5280304IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035571327360IPR015880Zinc finger, C2H2-like
SMARTSM0035522365387IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010044Biological Processresponse to aluminum ion
GO:0010447Biological Processresponse to acidic pH
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 515 aa     Download sequence    Send to blast
MEGEMIRTLE TAMKASSSMA SGTEDPDQQI MRPNSMEQFY FSRPNQSFPG FPPFFGAPSS  60
SLYLPNDNEP KVGNQFEQNP APNNLLIDWD PQAIVSNLSF LEQKIKQVKD IVLSMSSREN  120
QAGGGSCELA AKQQLITADL TSIIIQLIST AGSLLPSMKN PLSSNPAVRQ LGNPLGSSMG  180
FGMNANQRPS TNNKTVMPDA EKTSDYEELM NSINTNQDEK DELIKCPNPC GGEGSEPTPM  240
DDHDVKESDD GGEGENLPPG SYVVLQLEKE EILAPHTHFC LICGKGFKRD ANLRMHMRGH  300
GDEYKTPAAL AKPSKDSSSD HAPVTRYSCP FVGCKRNKEH KKFQPLKTIL CVKNHYKRSH  360
CDKSYTCSRC NTKKFSVIAD LKTHEKHCGR DKWLCSCGTT FSRKDKLFGH VALFQGHTPA  420
LPMDDVKVSE ASEQPQGSEA MNEITRNIGY NMPCSSSDGI SNLDMKVADD PRGYFSPLNF  480
DPCFGALDDF ARPGFDISEN PFSFLPSGSC SFGQN
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in aluminum tolerance. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00196ampDAPTransfer from AT1G34370Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap462968898
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001149728.20.0uncharacterized protein LOC100283355
RefseqXP_020397739.10.0uncharacterized LOC100283355 isoform X1
RefseqXP_020397740.10.0uncharacterized LOC100283355 isoform X1
SwissprotQ943I60.0STOP1_ORYSJ; Zinc finger protein STOP1 homolog
TrEMBLA0A3L6RHU50.0A0A3L6RHU5_PANMI; Uncharacterized protein
STRINGGRMZM2G075956_P020.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP151238111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.21e-159C2H2 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]