PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462969128
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family HSF
Protein Properties Length: 82aa    MW: 8971.29 Da    PI: 9.1038
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462969128genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind75.96.8e-241171262
                  HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTE CS
  HSF_DNA-bind  2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgF 62
                  F+ k+y ++ed+ ++ +i w + +nsf+v d+  f++++Lp +Fkh+nf+SFvRQLn+Y F
     462969128 11 FVWKTYMMVEDPGTDGVIGWGRGNNSFIVADPFVFSQTLLPAHFKHNNFSSFVRQLNTYIF 71
                  9**********************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004152.1E-15782IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.109.4E-26871IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.63E-221071IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.8E-131134IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004475.3E-191171IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.8E-134961IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.8E-136274IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 82 aa     Download sequence    Send to blast
MAAGGGAAAP FVWKTYMMVE DPGTDGVIGW GRGNNSFIVA DPFVFSQTLL PAHFKHNNFS  60
SFVRQLNTYI FGVREIFLLG GK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5w_B7e-18871164Putative transcription factor
5d5x_B7e-18871164Putative transcription factor
5d5x_E7e-18871164Putative transcription factor
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462969128
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5409753e-77JX540975.1 Paspalum vaginatum clone StvSingle_HKZDOCN01AUS53 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004965592.11e-43heat stress transcription factor C-2b
SwissprotQ0DBL62e-37HFC2B_ORYSJ; Heat stress transcription factor C-2b
TrEMBLA0A368QVH63e-42A0A368QVH6_SETIT; Uncharacterized protein
STRINGPavir.J36148.1.p2e-38(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.16e-29heat shock transcription factor C1