PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462969132
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family ERF
Protein Properties Length: 215aa    MW: 23481.1 Da    PI: 4.8566
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462969132genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.53.4e-183279152
        AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkk 52
               + y+GVr +  +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++aa++ 
  462969132 32 PSYRGVRMRA-WGKWVSEIREPRK---KSRIWLGTFPTPEMAARAHDAAALV 79
               57*****998.**********843...6*********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.17E-223291No hitNo description
PfamPF008471.0E-123279IPR001471AP2/ERF domain
SMARTSM003803.9E-363396IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-313392IPR001471AP2/ERF domain
SuperFamilySSF541711.63E-213390IPR016177DNA-binding domain
PROSITE profilePS5103223.2093390IPR001471AP2/ERF domain
PRINTSPR003672.7E-103445IPR001471AP2/ERF domain
PRINTSPR003672.7E-105672IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MPPEYDITRP ATSPPAGGVE KRGKGGGSGR HPSYRGVRMR AWGKWVSEIR EPRKKSRIWL  60
GTFPTPEMAA RAHDAAALVV KGPNAVLNFP EMAASLPRPA SSSPRDVQAA AARAAAMHDH  120
DHVVGATMPA APPEQRQASS FDDDNEELEE IVELPQVDED LTGDLMFRTS FHDSATEPWY  180
EQQSWTLAGI AAHDEMIVPG LEQDHLWTQP ADGTD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-172390572Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462969132
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9745751e-90EU974575.1 Zea mays clone 453357 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020193635.16e-57ethylene-responsive transcription factor ERF039-like
SwissprotQ9LYD32e-46DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLA0A3B6RHU84e-56A0A3B6RHU8_WHEAT; Uncharacterized protein
TrEMBLA0A446XM814e-56A0A446XM81_TRITD; Uncharacterized protein
STRINGMLOC_17203.15e-56(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.12e-27ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]