PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462969457
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family LBD
Protein Properties Length: 236aa    MW: 25135.1 Da    PI: 8.0884
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462969457genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26065.11.8e-20492181
     DUF260  1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkal...peeeredamsslvyeAearardPvyGavgvil 81
               +C++C+vlr++C++ C+++p++     p++q++++ +++k++G++ +l+ll+a     ++ r+++++sl+yeA+ r+ +P + a+ +++
  462969457  4 SCNGCRVLRKGCSDACTIRPCLqwiktPEAQANATVFLAKFYGRAGLLNLLAAPgpgADHLRPAVFRSLLYEACGRIVNPDRDAADLLR 92
               6***************************************************986656778*******************999987765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089112.3373112IPR004883Lateral organ boundaries, LOB
PfamPF031959.4E-16492IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCSDACT IRPCLQWIKT PEAQANATVF LAKFYGRAGL LNLLAAPGPG  60
ADHLRPAVFR SLLYEACGRI VNPDRDAADL LRVARAGRTK FKRASSSSNT KQAAGKPGSN  120
KKQQQRASAS GSPRPGTPTQ EHGEESAGSH QHLEGSSTQD TEAEAGSHVS QAEEHHSHAS  180
PASRPNRHDD DEEEEVGLDL TLGLEPPVAR PPPTSCDLRG MSAASSLMGL RLELPA
Cis-element ? help Back to Top
SourceLink
PlantRegMap462969457
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001142806.13e-65uncharacterized protein LOC100275184
TrEMBLB6SPU96e-64B6SPU9_MAIZE; LOB domain-containing protein 42
STRINGGRMZM2G060544_P011e-64(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP123537127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67100.12e-37LOB domain-containing protein 40