PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462969508
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family WRKY
Protein Properties Length: 364aa    MW: 38781.8 Da    PI: 4.9835
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462969508genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY104.46.1e-33204261260
                --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                dDgynWrKYGqK++kgse+prsYY+C+++gCp+kkkvers  d++v+ei+Y+g+Hnh+k
  462969508 204 DDGYNWRKYGQKQMKGSENPRSYYKCSFPGCPTKKKVERSP-DGQVTEIVYKGSHNHPK 261
                8****************************************.***************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.4E-29197262IPR003657WRKY domain
PROSITE profilePS5081124.145198262IPR003657WRKY domain
SuperFamilySSF1182903.4E-25201262IPR003657WRKY domain
SMARTSM007741.1E-35203261IPR003657WRKY domain
PfamPF031061.1E-25204260IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MTSAPASLGS LANSGPVALS FGSFLGGGSR LKTMAPSSLP LSPSSGFNAA SGFLESPILL  60
TPSLFLSPTT GAFPSEPFNW MGTPENLQES VKDEQQRQGF DFTFQMAASA PPAMMAGATQ  120
AESFSQSSML MAPLEGIGDC SYNNEPQPWS YQQEPAAMDF NAPPFEAPTS VAAATQPAEH  180
MHGGYGAAAP AGFRDQTTSR RSSDDGYNWR KYGQKQMKGS ENPRSYYKCS FPGCPTKKKV  240
ERSPDGQVTE IVYKGSHNHP KPAQGTRRGA ASSASASTYV LQSAANYNDE HSQQQAGVVV  300
RPAPMQAADQ SGGGFALSGF GDTMGVTYPY ASNQQQQSDA MYYASRTKDE PSDDMSFFEQ  360
PLLF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-172042621574WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (PubMed:26025535). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:19199048, PubMed:26025535). Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (PubMed:15618416, PubMed:19199048, PubMed:26025535). {ECO:0000269|PubMed:15618416, ECO:0000269|PubMed:19199048, ECO:0000269|PubMed:26025535}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462969508
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:15618416, PubMed:19199048). Slightly down-regulated by gibberellic acid (GA) (PubMed:15618416). Accumulates in response to jasmonic acid (MeJA) (By similarity). {ECO:0000250|UniProtKB:Q6B6R4, ECO:0000269|PubMed:15618416, ECO:0000269|PubMed:19199048}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0549493e-77BT054949.2 Zea mays full-length cDNA clone ZM_BFc0099F08 mRNA, complete cds.
GenBankEU9566843e-77EU956684.1 Zea mays clone 1570668 WRKY70 - superfamily of TFs having WRKY and zinc finger domains mRNA, complete cds.
GenBankKJ7275833e-77KJ727583.1 Zea mays clone pUT5443 WRKY transcription factor (WRKY57) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025809961.11e-102WRKY transcription factor WRKY24-like
SwissprotQ6IEQ74e-53WRK24_ORYSJ; WRKY transcription factor WRKY24
TrEMBLA0A2S3HB631e-100A0A2S3HB63_9POAL; Uncharacterized protein
STRINGPavir.J03800.1.p1e-101(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29923687
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38470.12e-33WRKY DNA-binding protein 33
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zhang ZL, et al.
    A negative regulator encoded by a rice WRKY gene represses both abscisic acid and gibberellins signaling in aleurone cells.
    Plant Mol. Biol., 2009. 70(1-2): p. 139-51
    [PMID:19199048]
  3. Basu S,Roychoudhury A
    Expression profiling of abiotic stress-inducible genes in response to multiple stresses in rice (Oryza sativa L.) varieties with contrasting level of stress tolerance.
    Biomed Res Int, 2014. 2014: p. 706890
    [PMID:25110688]
  4. Zhang L, et al.
    Three WRKY transcription factors additively repress abscisic acid and gibberellin signaling in aleurone cells.
    Plant Sci., 2015. 236: p. 214-22
    [PMID:26025535]