PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462969726

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

bZIP

Protein Properties

Length: 299aa MW: 32687.3 Da PI: 6.547

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462969726	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	53.5	5.2e-17	134	186	3	55
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke 55 e kr rr+ +NRe+ArrsR+RK+a++ eLe v++L+++N +L k+l e +++ 462969726 134 ETKRIRRMVSNRESARRSRRRKQAQLSELESQVEQLKGQNATLFKQLTEANQQ 186 579*****************************************777776665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	3.7E-16	132	196	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	9.0E-15	134	186	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.415	134	186	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	2.56E-12	136	187	No hit	No description
Gene3D	G3DSA:1.20.5.170	4.8E-14	136	187	No hit	No description
PROSITE pattern	PS00036	0	139	154	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 299 aa Download sequence Send to blast
MEKCPSELQL EAFIREDDRN EPSRRPQAGG LDEPGGGGRA SSGVFGRLPG IGFGDQNSMD 60 GSSDDNLWWS GSIRSPQPTS STTVEWQRTS ISVAASPSGT SSPSHRHESE SDSDSESLID 120 VEGAPCTRRT KSLETKRIRR MVSNRESARR SRRRKQAQLS ELESQVEQLK GQNATLFKQL 180 TEANQQFTTA VTDNRILKSD VEALRVKVKM AEDMVARSAM SCGLGDLGLA PFLNSRKISQ 240 ALDMLTVTGF DMLGRDACFR GPTPARQVQN SPVQSTASLE SLDNRKSSEV TSCAVDMWP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	148	155	RRSRRRKQ
2	150	155	SRRRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds to the DNA specific sequence 5'-TGAGTCA-3' found in seed storage protein gene promoters (PubMed:11133985). May function as a negative regulator in cold and drought stress responses (PubMed:22189955). {ECO:0000269\|PubMed:11133985, ECO:0000269\|PubMed:22189955}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462969726

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by cold stress in roots. {ECO:0000269\|PubMed:22189955}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004965642.1	1e-128	bZIP transcription factor RISBZ5
Swissprot	Q654B3	1e-100	RSBZ5_ORYSJ; bZIP transcription factor RISBZ5
TrEMBL	K3XYN5	1e-127	K3XYN5_SETIT; Uncharacterized protein
STRING	Pavir.Db00496.1.p	1e-129	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2095	37	96

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G24800.1	6e-28	basic leucine zipper 9

Publications ? help Back to Top
Onodera Y,Suzuki A,Wu CY,Washida H,Takaiwa F A rice functional transcriptional activator, RISBZ1, responsible for endosperm-specific expression of storage protein genes through GCN4 motif. J. Biol. Chem., 2001. 276(17): p. 14139-52 [PMID:11133985] Liu C,Wu Y,Wang X bZIP transcription factor OsbZIP52/RISBZ5: a potential negative regulator of cold and drought stress response in rice. Planta, 2012. 235(6): p. 1157-69 [PMID:22189955]