PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 46434
Common NameMICPUCDRAFT_46434
Organism
Micromonas pusilla CCMP1545
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas; Micromonas pusilla
Family AP2
Protein Properties Length: 314aa    MW: 33206.4 Da    PI: 10.2985
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
46434genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP224.19.3e-08118158550
    AP2   5 GVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaar 50 
            GV+ +k +g+W+A +++      +k+++lg+f t+ee  +   +ar
  46434 118 GVCHHKASGKWRAIVYVN-----KKQVNLGYFTTKEESEETVRRAR 158
            9*************8883.....5**********999877666666 PP
2AP237.94.4e-12180231353
    AP2   3 ykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkl 53 
            + GV wdk  +rW+A++++p+++g k k + +g+++ +eeA +a ia rk+l
  46434 180 INGVNWDKHCKRWLARVYEPTKDGkKGKEHKVGYYDDEEEAGRAIIARRKEL 231
            56**************99999999777**********778887777777765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541714.9E-5117151IPR016177DNA-binding domain
PfamPF008479.5E-6180231IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-6180228IPR016177DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MAPGGDHVAN ARDASIRGEA PDDGVFLDDR ARAVLGGRKR ARETSGHPTN EDDDTPTDSP  60
APTPGVIPTP EQGTPMISVD GVKKKRNSKP KRIQFGEPPP GVINIAIDPP NGRYNKNGVC  120
HHKASGKWRA IVYVNKKQVN LGYFTTKEES EETVRRAREF GLPPGFVNCR AHAQPKRSAI  180
NGVNWDKHCK RWLARVYEPT KDGKKGKEHK VGYYDDEEEA GRAIIARRKE LGLPEKSTRK  240
KREKKTGTGT VAAAAAAGAA ASLATIGVGG GGGGSGAGAV EASVNFDGLV DLGAVEAMTV  300
GGALGVPPPR SRR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1226241RRKELGLPEKSTRKKR
2238243RKKREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003055787.10.0predicted protein
TrEMBLC1MJ800.0C1MJ80_MICPC; Predicted protein
STRINGXP_003055787.10.0(Micromonas pusilla)
Publications ? help Back to Top
  1. Worden AZ, et al.
    Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas.
    Science, 2009. 324(5924): p. 268-72
    [PMID:19359590]