PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information? help Back to Top

TF ID

46789

Common Name

MICPUCDRAFT_46789

Organism

Taxonomic ID

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas; Micromonas pusilla

Family

Protein Properties

Length: 296aa MW: 31345.8 Da PI: 10.5029

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
46789	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	61.5	1.1e-19	151	184	1	34
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 C nC+t kTplWR+gpdg+ktLCnaCG+++++ + 46789 151 CFNCRTQKTPLWRNGPDGPKTLCNACGVRFKLGK 184 *******************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50114	14.826	145	205	IPR000679	Zinc finger, GATA-type
SMART	SM00401	4.7E-16	145	206	IPR000679	Zinc finger, GATA-type
SuperFamily	SSF57716	9.5E-14	148	188	No hit	No description
Gene3D	G3DSA:3.30.50.10	2.3E-17	149	187	IPR013088	Zinc finger, NHR/GATA-type
CDD	cd00202	3.19E-15	150	182	No hit	No description
Pfam	PF00320	3.8E-17	151	184	IPR000679	Zinc finger, GATA-type
PROSITE pattern	PS00344	0	151	176	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 296 aa Download sequence Send to blast
MASANNAAET APQPSQAPSA HHAPHAVAHP GLVLPQQAMN AAAKLARYGE HARPPSNHQV 60 PSLVEVQMLL NRGRAMLGVP PLPMTKVPSL KELNARVASP VALPFVAIAQ QQYEQQQQQQ 120 QHANDASAAA ANPPPDPSGD GDLAPCAGKV CFNCRTQKTP LWRNGPDGPK TLCNACGVRF 180 KLGKLPPPGG FPPGHVIPKP PPRKRPAGKL VDAEGKVKKQ RVGGDEANPN LTGARKKKRT 240 IRLHNPNANG FHHNDENHGA RFTAHGKLHA ARSAEAMTEY DGAVLLMVLA GLYNQ*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003057398.1	0.0	predicted protein
TrEMBL	C1MMG0	0.0	C1MMG0_MICPC; Predicted protein
STRING	XP_003057398.1	0.0	(Micromonas pusilla)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP4369	10	12

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G26150.1	3e-12	cytokinin-responsive gata factor 1

Link Out ? help Back to Top
Phytozome	46789
Entrez Gene	9682362

Publications ? help Back to Top
Worden AZ, et al. Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas. Science, 2009. 324(5924): p. 268-72 [PMID:19359590]