PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

470423

Common Name

ARALYDRAFT_470423

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

C2H2

Protein Properties

Length: 154aa MW: 17599.8 Da PI: 9.7924

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
470423	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.4	0.00049	8	28	2	22
EETTTTEEESSHHHHHHHHHH CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt 22 +C +C+++F ++++L +H + 470423 8 ECAICKRVFLSSHHLISHFND 28 6*****************765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	9.265	7	35	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	9	30	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 154 aa Download sequence Send to blast
MAFSNPQECA ICKRVFLSSH HLISHFNDVH SNRHGSTFSS SAIATPTSFR HYPNVNRNPN 60 PDFQARNHFD VNYYRRGYLD DHGRFHKGCS PTPVITPTRK YKFLLPKMPT TPKLMDLFPT 120 LPLIWQLEQR RAEDSAVTEN GGANSSSIDL SLRL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	470423

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB493430	2e-76	AB493430.1 Arabidopsis thaliana At1g04445 mRNA for hypothetical protein, partial cds, clone: RAAt1g04445.
GenBank	CP002684	2e-76	CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBank	F19P19	2e-76	AC000104.1 Sequence of BAC F19P19 from Arabidopsis thaliana chromosome 1, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020870674.1	1e-110	uncharacterized protein LOC9325570
TrEMBL	D7KDE8	1e-112	D7KDE8_ARALL; Uncharacterized protein (Fragment)
STRING	fgenesh2_kg.1__377__AT1G04445.1	1e-112	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13551	13	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G04445.1	4e-72	C2H2-like zinc finger protein

Link Out ? help Back to Top
Phytozome	470423
Entrez Gene	9325570