PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 471072
Common NameARALYDRAFT_471072
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family MYB_related
Protein Properties Length: 627aa    MW: 66389.5 Da    PI: 9.8893
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
471072genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.21.9e-08198242144
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHH..HHTTTS-HHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIar..tmgkgRtlkqcksrw 44 
                      r++W+++Ede l  avk+ G g+W+ I +    g +Rt+ q+  rw
           471072 198 RKKWSAQEDEELFAAVKRCGEGNWAHIVKgdFRG-KRTASQLSQRW 242
                      789***********************97621344.89999999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.466193249IPR017930Myb domain
SuperFamilySSF466892.08E-11195248IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.4E-11195245IPR009057Homeodomain-like
SMARTSM007172.2E-9197248IPR001005SANT/Myb domain
PfamPF002492.4E-6198242IPR001005SANT/Myb domain
CDDcd116601.15E-13199247No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 627 aa     Download sequence    Send to blast
MVDDTSSNSR KRIITEGDIA TLLQRYDMKT ILKMLQEMAY YSEIKMDWNE LVKKTTTGIT  60
NAREYQSLWR HLSYRHPLLP VEDDAQPLDD DSDMECELEA SPAVSHEASV EAIAHVKVMA  120
ASYVPNESDI LDNSTVEAPL TINIPYVLPE GSQEPSESHW SSRGMNITFP VCLQKVTSTE  180
GMNGNGSAGS SMAFRKKRKK WSAQEDEELF AAVKRCGEGN WAHIVKGDFR GKRTASQLSQ  240
RWALIRKRCD TLTSVSQSGL QPTEAQIAVN HAISLALGNR PPSKKLAIGV MPTTSSCSIT  300
EPEANGGSSS QGQQQFKPIV QALPRAGTSL LVSKSRVVKK STASSTSRSN LMVTANSVAA  360
AACMGDVLTA ASRPKVEPGK TDAPLVPKTK PAKNASTACM PRPSGSLSMP KVEPGTSVAA  420
SSIIKAVGPA NMRPLANGEL KPVTASSSSN KLPLMAPRSE GSTMLSASAP LASPSRIVSN  480
QRVFAASVPA TVLQPKPTAE TVTCKPDGGQ KGQARGNEAS SSAAIQPHQM TSINSEIRQG  540
KQATQAQSPN LLPRKVPVVR AAVHCATNHK LVDNPSDKTV VPIRGAGSQS KAKDEVNSKV  600
GPALKVSSVC GKPLEVATVA GTGQGV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1195199KKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMap471072
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5195460.0AY519546.1 Arabidopsis thaliana MYB transcription factor (At1g09710) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020868169.10.0uncharacterized protein LOC9328581 isoform X1
TrEMBLD7KJT30.0D7KJT3_ARALL; DNA binding protein
STRINGfgenesh2_kg.1__1026__AT1G09710.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM48232751
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09710.10.0MYB_related family protein