PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

471177

Common Name

ARALYDRAFT_471177

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

bHLH

Protein Properties

Length: 175aa MW: 20122.6 Da PI: 10.8755

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
471177	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	19.4	1.8e-06	16	63	2	54
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r+ n rE+ RR r+++ f+ L +++ + ++l + +Av Y+ +L 471177 16 REQRNLREKERRMRMKHLFSALSSHVSPT-----RRLPVPQLIDQAVSYMIQL 63 7889**********************997.....7899999999999998887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	2.49E-11	13	80	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	11.452	14	63	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.0E-6	16	79	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	0.0023	20	69	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 175 aa Download sequence Send to blast
MERGREIGEG SASSLREQRN LREKERRMRM KHLFSALSSH VSPTRRLPVP QLIDQAVSYM 60 IQLKEKVNYL NEKKMSLLRG EVKNRSAGSS LLPKLSIRSR DSVIEMNLVM DLNMKRIMLH 120 KLVSVFEEEG AQVMSVNLQN LNDRTFYTII AQAIICRIGI DPSRIEKRLR DIIS*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	20	25	LREKER

Cis-element ? help Back to Top
Source	Link
PlantRegMap	471177

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC007067	1e-143	AC007067.4 Genomic sequence for Arabidopsis thaliana BAC T10O24 from Chromosome 1, complete sequence.
GenBank	CP002684	1e-143	CP002684.1 Arabidopsis thaliana chromosome 1 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020870804.1	1e-123	transcription factor bHLH168
Swissprot	Q9XIJ1	1e-112	BH168_ARATH; Transcription factor bHLH168
TrEMBL	D7KLF8	1e-121	D7KLF8_ARALL; T10O24.23
STRING	fgenesh2_kg.1__1131__AT1G10586.1	1e-122	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2382	21	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10586.1	1e-103	bHLH family protein

Link Out ? help Back to Top
Phytozome	471177
Entrez Gene	9328644