PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 471409
Common NameARALYDRAFT_471409
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ERF
Protein Properties Length: 200aa    MW: 22368 Da    PI: 5.1459
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
471409genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.64.2e-151868155
     AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
            + y+G+r++    +Wv+e+r+p     +  +r++lg++ ta++Aa+a++ a ++l+g
  471409 18 PVYRGIRRRN-GDKWVCEVREP-----ThqRRIWLGTYPTADMAARAHDVAVLALRG 68
            68*****877.9*********8.....336*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.4E-101868IPR001471AP2/ERF domain
SuperFamilySSF541713.33E-191978IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.3E-281978IPR001471AP2/ERF domain
SMARTSM003802.7E-231982IPR001471AP2/ERF domain
PROSITE profilePS5103221.5621976IPR001471AP2/ERF domain
CDDcd000182.86E-252078No hitNo description
PRINTSPR003673.0E-72031IPR001471AP2/ERF domain
PRINTSPR003673.0E-74258IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0010371Biological Processregulation of gibberellin biosynthetic process
GO:0016049Biological Processcell growth
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0050826Biological Processresponse to freezing
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MRPKKRAGRR VFKETRHPVY RGIRRRNGDK WVCEVREPTH QRRIWLGTYP TADMAARAHD  60
VAVLALRGRS ACLNFADSAW QLPVPESNDP DVIRRVAAEA AEMFRPVDLG SGITVLPSLG  120
DDVDLGFGSG SGSGSGSEER NSSSYAFGDY EEVSTTMMRL AEEPLMSPPR SYTEDMTPSN  180
VYTEEEMCYE DISLWSYSY*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates cold or dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00001PBM25378322Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap471409
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress. {ECO:0000269|PubMed:11798174}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0254170.0AC025417.4 Genomic sequence for Arabidopsis thaliana BAC T12C24 from chromosome I, complete sequence.
GenBankAK2281940.0AK228194.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL14-63-M15.
GenBankAY5608920.0AY560892.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At1g12610) mRNA, complete cds.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020870917.11e-146dehydration-responsive element-binding protein 1F
SwissprotQ9LN861e-131DRE1F_ARATH; Dehydration-responsive element-binding protein 1F
TrEMBLD7KP851e-145D7KP85_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.1__1363__AT1G12610.11e-146(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35528187
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12610.11e-124ERF family protein
Publications ? help Back to Top
  1. Kazama D,Kurusu T,Mitsuda N,Ohme-Takagi M,Tada Y
    Involvement of elevated proline accumulation in enhanced osmotic stress tolerance in Arabidopsis conferred by chimeric repressor gene silencing technology.
    Plant Signal Behav, 2014. 9(3): p. e28211
    [PMID:24614501]
  2. Kazama D, et al.
    Identification of Chimeric Repressors that Confer Salt and Osmotic Stress Tolerance in Arabidopsis.
    Plants (Basel), 2013. 2(4): p. 769-85
    [PMID:27137403]
  3. Song GQ,Gao X
    Transcriptomic changes reveal gene networks responding to the overexpression of a blueberry DWARF AND DELAYED FLOWERING 1 gene in transgenic blueberry plants.
    BMC Plant Biol., 2017. 17(1): p. 106
    [PMID:28629320]
  4. Imran QM, et al.
    Transcriptome profile of NO-induced Arabidopsis transcription factor genes suggests their putative regulatory role in multiple biological processes.
    Sci Rep, 2018. 8(1): p. 771
    [PMID:29335449]