PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 471652
Common NameARALYDRAFT_471652
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ZF-HD
Protein Properties Length: 169aa    MW: 19773.4 Da    PI: 9.4736
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
471652genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer78.68.1e-25352257
  ZF-HD_dimer  2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57
                 ++++Y+eC++NhAa+lG++a+DGC+Ef +s      a++  C ACgCHR++HRr  
       471652  3 SSCVYRECMRNHAAKLGSYAIDGCREFSQS------ATGDLCVACGCHRSYHRRID 52
                 5789*************************9......67789*************76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257742.0E-20450IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047703.2E-18650IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152318.439751IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015662.2E-16750IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.605.5E-1792165IPR009057Homeodomain-like
SuperFamilySSF466891.25E-797164IPR009057Homeodomain-like
TIGRFAMsTIGR015653.4E-30106165IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
MQSSCVYREC MRNHAAKLGS YAIDGCREFS QSATGDLCVA CGCHRSYHRR IDVISSAQVT  60
HTRFPFTSLR RVKQLARLKW KTAEERNEEE EEDTEETSAE EKMTVQRRRK SKFTAEQREA  120
MKEYAAKLGW TLKDKRALRE EIRVFCEGIG VSRYLFKTWV NNNKKFYH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1105110QRRRKS
2106111RRRKSK
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00143DAPTransfer from AT1G14687Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap471652
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0069170.0AC006917.6 Genomic sequence for Arabidopsis thaliana BAC F10B6 from chromosome I, complete sequence.
GenBankAY0865230.0AY086523.1 Arabidopsis thaliana clone 25577 mRNA, complete sequence.
GenBankBT0039420.0BT003942.1 Arabidopsis thaliana clone RAFL15-16-E16 (R20740) unknown protein (At1g14687) mRNA, complete cds.
GenBankBT0050270.0BT005027.1 Arabidopsis thaliana clone U20740 unknown protein (At1g14687) mRNA, complete cds.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002890071.11e-123zinc-finger homeodomain protein 14
SwissprotQ9LQW31e-101ZHD14_ARATH; Zinc-finger homeodomain protein 14
TrEMBLD7KCI51e-121D7KCI5_ARALL; ATHB32
STRINGfgenesh2_kg.1__1606__AT1G14687.11e-122(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM137282124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14687.11e-102homeobox protein 32