PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 471935
Common NameARALYDRAFT_471935
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family M-type_MADS
Protein Properties Length: 213aa    MW: 24291.9 Da    PI: 8.4555
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
471935genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF67.71.1e-214997149
            S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
  SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
            k ie++++rqvtfskRr g++KK  ELSvL++a++avi fs+ g++y +
  471935 49 KIIEEETKRQVTFSKRRRGLFKKSAELSVLTGAKIAVITFSKCGRIYRF 97
            579*******************************************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006624.72641101IPR002100Transcription factor, MADS-box
SMARTSM004322.9E-2541100IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.49E-2342116IPR002100Transcription factor, MADS-box
PRINTSPR004044.3E-194363IPR002100Transcription factor, MADS-box
PfamPF003193.1E-215197IPR002100Transcription factor, MADS-box
PRINTSPR004044.3E-196378IPR002100Transcription factor, MADS-box
PRINTSPR004044.3E-197899IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MEEERETSTM TCLTPKDPLQ SPNMLVSQPK KETTQTPKTT RGRQKIEIKI IEEETKRQVT  60
FSKRRRGLFK KSAELSVLTG AKIAVITFSK CGRIYRFGHV DALIDKYLRK SPVKLEGYSG  120
DNVADEESRR PWWERPVESV PEEELEEYMA ALSMLRENIG KKIVAMGNDR TVEMVPAWPI  180
NVMGWKPPMD MQNLENLTDG ITRCRVGDQN GD*
Cis-element ? help Back to Top
SourceLink
PlantRegMap471935
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1412400.0AY141240.1 Arabidopsis thaliana MADS-box protein AGL100 mRNA, complete cds.
GenBankBT0252840.0BT025284.1 Arabidopsis thaliana At1g17310 mRNA, complete cds.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankDQ4462580.0DQ446258.1 Arabidopsis thaliana clone pENTR221-At1g17310 MADS-box protein (At1g17310) mRNA, complete cds.
GenBankT13M220.0AC026479.2 Sequence of BAC T13M22 from Arabidopsis thaliana chromosome 1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002892945.11e-156agamous-like MADS-box protein AGL61
TrEMBLD7KFE11e-155D7KFE1_ARALL; MADS-box protein
STRINGfgenesh2_kg.1__1889__AT1G17310.11e-156(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM46972052
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17310.11e-111M-type_MADS family protein