PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 472144
Common NameARALYDRAFT_472144
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ERF
Protein Properties Length: 187aa    MW: 20972.8 Da    PI: 4.3458
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
472144genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.49.6e-201162156
     AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
            s+ykGVr +k +g+Wv+eIr p++   r r++lg+++t+e+Aa+a +aa  +l+g+
  472144 11 SKYKGVRKRK-WGKWVSEIRLPNS---RERIWLGSYDTPEKAARAFDAALYCLRGN 62
            89*****999.**********933...5*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.03E-211171IPR016177DNA-binding domain
PfamPF008473.2E-121161IPR001471AP2/ERF domain
CDDcd000181.27E-281171No hitNo description
Gene3DG3DSA:3.30.730.104.7E-301270IPR001471AP2/ERF domain
PROSITE profilePS5103222.1811269IPR001471AP2/ERF domain
SMARTSM003801.2E-301275IPR001471AP2/ERF domain
PRINTSPR003671.1E-91324IPR001471AP2/ERF domain
PRINTSPR003671.1E-93551IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MEEGSSSSMQ SKYKGVRKRK WGKWVSEIRL PNSRERIWLG SYDTPEKAAR AFDAALYCLR  60
GNNAKFNFPD NPPVINDGRN LSRSEIREAA ARFANSSEDD SSGGGAGYEI RQESTSTSMD  120
IDSEFLTMLP TVGSGNFASE FGLFPGFDDF SDEYSGDRFR EQLSPTQDYY QGEEDYEGGS  180
MFLWNF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-1610691272Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11319KGVRKRK
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00151DAPTransfer from AT1G19210Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap472144
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0083900.0AY008390.1 Arabidopsis thaliana ARF11/IAA22 gene, complete cds.
GenBankBT0061910.0BT006191.1 Arabidopsis thaliana clone C00087 (K) putative AP2 domain transcription factor (At1g19210) mRNA, complete cds.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankT29M80.0AC069143.3 Sequence of BAC T29M8 from Arabidopsis thaliana chromosome 1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002893033.11e-134ethylene-responsive transcription factor ERF017
SwissprotQ84QC21e-123ERF17_ARATH; Ethylene-responsive transcription factor ERF017
TrEMBLD7KHB21e-133D7KHB2_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.1__2098__AT1G19210.11e-134(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16142890
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.11e-117ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Li SJ, et al.
    The Citrus transcription factor, CitERF13, regulates citric acid accumulation via a protein-protein interaction with the vacuolar proton pump, CitVHA-c4.
    Sci Rep, 2016. 6: p. 20151
    [PMID:26837571]
  3. Yin XR, et al.
    Involvement of an ethylene response factor in chlorophyll degradation during citrus fruit degreening.
    Plant J., 2016. 86(5): p. 403-12
    [PMID:27037684]