PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 472338
Common NameARALYDRAFT_472338
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family SBP
Protein Properties Length: 1041aa    MW: 115334 Da    PI: 8.2521
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
472338genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP129.99.2e-41126203178
             --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
     SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
             +Cqv++C++dls+ak+yhrrhkvCevhska+++lv +++qrfCqqCsrfh lsefDe+krsCrrrLa+hn+rrrk+++
  472338 126 MCQVDNCTEDLSHAKDYHRRHKVCEVHSKATKALVGKQMQRFCQQCSRFHLLSEFDEGKRSCRRRLAGHNRRRRKTTQ 203
             6**************************************************************************875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.107.6E-34119188IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.077124201IPR004333Transcription factor, SBP-box
SuperFamilySSF1036123.27E-37125203IPR004333Transcription factor, SBP-box
PfamPF031109.2E-29127200IPR004333Transcription factor, SBP-box
CDDcd002041.06E-8791934No hitNo description
Gene3DG3DSA:1.25.40.202.0E-7791942IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484036.46E-8832938IPR020683Ankyrin repeat-containing domain
PROSITE profilePS502979.092834947IPR020683Ankyrin repeat-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042742Biological Processdefense response to bacterium
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1041 aa     Download sequence    Send to blast
MDEVGAQVAA PMFIHHPMGK KRDLYYPMSN RLVQSQPRSD EWNSKMWDWD SRRFEAKPVD  60
VEVLRLGNEA QEFDLTLRNR SGEERGLDLN LGSGLTAVED LTTTTTQNGR PSKKVRSGSP  120
GGNYPMCQVD NCTEDLSHAK DYHRRHKVCE VHSKATKALV GKQMQRFCQQ CSRFHLLSEF  180
DEGKRSCRRR LAGHNRRRRK TTQPEEVASG VVVPGNRDNN NNTSTTNMDL MALLTALACA  240
QGKNAVKPAG SPAVPDREQL LQILNKINAL PLPMDLVSKL NNIGSLARKN MDHPTVNPQN  300
DMNGASPSTM DLLAVLSTTL GSSSPDALAI LSQGGFGNKD SEKTKLSSYE HGVTTNLEKR  360
TFGFSSVGGE RSSSSNQSPS QDSDSRGQDT RSSLSLQLFT SSPEDESRPT VASSRKYYSS  420
ASSNPAEDRS PSSSPVMQEL FPLQTSPETM RSKNHNNTSP RTGCLPLELF GASNRGAANP  480
NFKGFRQQSG YASSGSDYSP PSLNSDAQDR TGKIVFKLLD KDPSQLPGTL RSEIYNWLSN  540
IPSEMESYIR PGCVVLSVYV AMSPAAWEQL EQNLLQRLGV LLQNSSSDFW RNARFIVNTG  600
RQLASHKNGK VRCSKSWRTW NSPELISVSP VAVVAGEETS LVVRGRSLTN DGISIRCTHM  660
GSYMSMDVTG AVCRQAIFDK LNVDSFKVQN VHPGFLGRCF IEVENGFRGD SFPLIIANES  720
ICNELNRLEE EFHPKSQDMT EEPAQSSNRG PTSREEVLCF LNELGWLFQK NQTSEPREQS  780
DFSLTRFKFL LVCSVERDYC ALIRTLLDML VERNLVNDEL NREALEMLAE IQLLNRAVKR  840
KSTKMVELLI HYSVNPSALS SFKKFVFLPN RTGPGGITPL HIAACTSGSD DMIDLLTNDP  900
QEIGLSSWNT LCDATGQTPY SYAAMRNNHN YNSLVARKLA DKRNRQVSLN IENEIVDQTG  960
LSKRLSSEMN KSSTCASCAT VALKYQRRVS GSHRLFPTPI IHSMLAVATV CVCVCVFMHA  1020
FPIVRQGSHF SWGGLDYGSI *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A5e-31117200384squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May play a role in plant development. {ECO:0000250, ECO:0000269|PubMed:15703061}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00155DAPTransfer from AT1G20980Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap472338
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2269070.0AK226907.1 Arabidopsis thaliana mRNA for squamosa promoter binding protein-like 14, clone: RAFL09-16-H09.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020868897.10.0squamosa promoter-binding-like protein 14
SwissprotQ8RY950.0SPL14_ARATH; Squamosa promoter-binding-like protein 14
TrEMBLD7KJX20.0D7KJX2_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.1__2292__AT1G20980.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM39992554
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G20980.10.0squamosa promoter binding protein-like 14
Publications ? help Back to Top
  1. Jorgensen SA,Preston JC
    Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis.
    Mol. Phylogenet. Evol., 2014. 73: p. 129-39
    [PMID:24508602]
  2. Liu J, et al.
    Characterizing Variation of Branch Angle and Genome-Wide Association Mapping in Rapeseed (Brassica napus L.).
    Front Plant Sci, 2016. 7: p. 21
    [PMID:26870051]