PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 472549
Common NameARALYDRAFT_472549
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ERF
Protein Properties Length: 152aa    MW: 16397.3 Da    PI: 10.2005
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
472549genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.83.5e-2060117155
     AP2   1 sgykGVrwdkkrgrWvAeIrdpse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
             ++++GVr+++ +g+W+AeIr+ +  +g   r  r++lg+f taeeAa a+++a+ +l g
  472549  60 KKFRGVRQRP-WGKWAAEIRCGRAhGGgkGRpERVWLGTFETAEEAALAYDNAAIQLIG 117
             59********.**********77755575449**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381234.2E-301150IPR017392AP2/ERF transcription factor ERF/PTI6
CDDcd000181.06E-2360125No hitNo description
Gene3DG3DSA:3.30.730.103.6E-2761125IPR001471AP2/ERF domain
PROSITE profilePS5103221.48361125IPR001471AP2/ERF domain
PfamPF008477.7E-1461117IPR001471AP2/ERF domain
SMARTSM003801.0E-2961131IPR001471AP2/ERF domain
SuperFamilySSF541715.56E-1961125IPR016177DNA-binding domain
PRINTSPR003671.0E-116273IPR001471AP2/ERF domain
PRINTSPR003671.0E-1191107IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    Send to blast
TEATDSSSSE DESPPSRRRG KKLVKEIVID PSDPPEVGKT RFKIRIPARF LAPKTTTNKK  60
KFRGVRQRPW GKWAAEIRCG RAHGGGKGRP ERVWLGTFET AEEAALAYDN AAIQLIGPDA  120
PTNFRRPDVD SPVVKQDSDA GGASAASGED V*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-19611241471Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap472549
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0870641e-142AY087064.1 Arabidopsis thaliana clone 31252 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020866096.11e-105ethylene-responsive transcription factor ERF069
SwissprotQ8W4I53e-71ERF69_ARATH; Ethylene-responsive transcription factor ERF069
TrEMBLD7KML61e-104D7KML6_ARALL; Uncharacterized protein (Fragment)
STRINGfgenesh2_kg.1__2503__AT1G22985.11e-104(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40002359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22985.15e-58ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]