PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

47266

Common Name

SELMODRAFT_47266

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

NAC

Protein Properties

Length: 223aa MW: 25102.6 Da PI: 9.6459

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
47266	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	173.3	7.4e-54	9	134	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkk 104 lppGfrFhPtdeelvv+yL+++++++++ + +i+evd+yk++PwdLp k+ +e+ewyfFs+rd+ky++g r+nra+ sgyWkatg+dk++ s +g +vg+kk 47266 9 LPPGFRFHPTDEELVVHYLARRAASRPFAV-PIIAEVDLYKFDPWDLPDKALFGEREWYFFSPRDRKYPNGARPNRAAGSGYWKATGTDKPISS-DGCKVGVKK 110 79***********************999.88***********8777899**********************************9.999** PP NAM 105 tLvfykgrapkgektdWvmheyrl 128 Lvfy+grapkg+kt+W+mheyrl 47266 111 ALVFYRGRAPKGSKTSWIMHEYRL 134 ********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	7.19E-67	4	165	IPR003441	NAC domain
PROSITE profile	PS51005	61.871	9	165	IPR003441	NAC domain
Pfam	PF02365	9.4E-28	10	134	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009414	Biological Process	response to water deprivation
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 223 aa Download sequence Send to blast
KKAVNSLQLP PGFRFHPTDE ELVVHYLARR AASRPFAVPI IAEVDLYKFD PWDLPDKALF 60 GEREWYFFSP RDRKYPNGAR PNRAAGSGYW KATGTDKPIS SDGCKVGVKK ALVFYRGRAP 120 KGSKTSWIMH EYRLADASGA SNRLSLRKKG SLRLDDWVLC RIYKKQSSDW KSPAASQEAP 180 SRENVKMDAD DESCLEEVLA SLPDIDDSKI CLPRLGSFTA MLS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	5e-86	4	168	15	171	NAC domain-containing protein 19
3swm_B	5e-86	4	168	15	171	NAC domain-containing protein 19
3swm_C	5e-86	4	168	15	171	NAC domain-containing protein 19
3swm_D	5e-86	4	168	15	171	NAC domain-containing protein 19
3swp_A	5e-86	4	168	15	171	NAC domain-containing protein 19
3swp_B	5e-86	4	168	15	171	NAC domain-containing protein 19
3swp_C	5e-86	4	168	15	171	NAC domain-containing protein 19
3swp_D	5e-86	4	168	15	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factors that bind specifically to the 5'-CATGTG-3' motif. {ECO:0000269\|PubMed:15319476}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00012	PBM	Transfer from AT1G52890	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Strongly induced by drought, high salinity and abscisic acid (ABA). Slightly up-regulated by cold treatment. Not induced by jasmonic acid. {ECO:0000269\|PubMed:15319476, ECO:0000269\|Ref.7}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002991033.2	1e-164	NAC domain-containing protein 72
Swissprot	Q93VY3	8e-89	NAC72_ARATH; NAC domain-containing protein 72
TrEMBL	D8T639	1e-162	D8T639_SELML; Uncharacterized protein (Fragment)
STRING	EFJ07841	1e-163	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP17	15	800

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G27410.2	2e-87	NAC family protein

Link Out ? help Back to Top
Phytozome	47266
Entrez Gene	9633766

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031] Zhu X, et al. Jasmonic acid promotes degreening via MYC2/3/4- and ANAC019/055/072-mediated regulation of major chlorophyll catabolic genes. Plant J., 2015. 84(3): p. 597-610 [PMID:26407000] Li S, et al. The role of ANAC072 in the regulation of chlorophyll degradation during age- and dark-induced leaf senescence. Plant Cell Rep., 2016. 35(8): p. 1729-41 [PMID:27154758] Ye H, et al. RD26 mediates crosstalk between drought and brassinosteroid signalling pathways. Nat Commun, 2017. 8: p. 14573 [PMID:28233777]