PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 4727
Organism
Selaginella moellendorffii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family MIKC_MADS
Protein Properties Length: 205aa    MW: 23632.8 Da    PI: 9.934
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
4727genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF93.97.3e-30959151
            S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
  SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
            krien + rqvtfskRr g+lKKA+ELSvLCda+va+iifsstgkl+ey+s
    4727  9 KRIENATSRQVTFSKRRGGLLKKAHELSVLCDAQVALIIFSSTGKLFEYAS 59
            79***********************************************86 PP
2K-box84.91.7e-2883173999
  K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
             +++++ + ++e+ +Lk+++e  q++qRhllG+dL  L lk+Lq+LeqqLe +l++iRs+K++++l++ie+l+++e +l++en++Lr++++
   4727  83 SQHHDSDYFSREVIRLKQQLERSQQTQRHLLGDDLAHLALKDLQSLEQQLELGLNRIRSRKEQVFLDEIEDLRRRELQLHKENEMLRRRVM 173
            4566678999*****************************************************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.87161IPR002100Transcription factor, MADS-box
SMARTSM004323.6E-42160IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.19E-35275IPR002100Transcription factor, MADS-box
CDDcd002656.40E-47275No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-31323IPR002100Transcription factor, MADS-box
PfamPF003194.8E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-312338IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-313859IPR002100Transcription factor, MADS-box
PfamPF014865.7E-3183172IPR002487Transcription factor, K-box
PROSITE profilePS5129715.45888178IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048481Biological Processplant ovule development
GO:0080155Biological Processregulation of double fertilization forming a zygote and endosperm
GO:0090376Biological Processseed trichome differentiation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
VGRGKIEIKR IENATSRQVT FSKRRGGLLK KAHELSVLCD AQVALIIFSS TGKLFEYAST  60
SMKEILDRYG KYPESVQGGN IASQHHDSDY FSREVIRLKQ QLERSQQTQR HLLGDDLAHL  120
ALKDLQSLEQ QLELGLNRIR SRKEQVFLDE IEDLRRRELQ LHKENEMLRR RVMQCPSNFV  180
NPLETREPPS FGNASLSLSS SRSQQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A4e-26174174MEF2C
5f28_B4e-26174174MEF2C
5f28_C4e-26174174MEF2C
5f28_D4e-26174174MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024538443.11e-131MADS-box transcription factor 27 isoform X3
RefseqXP_024540272.11e-131MADS-box transcription factor 27 isoform X7
SwissprotQ6EP494e-57MAD27_ORYSJ; MADS-box transcription factor 27
TrEMBLD8S8B21e-127D8S8B2_SELML; MADS-domain transcription factor
STRINGEFJ193811e-128(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09960.12e-42MIKC_MADS family protein
Publications ? help Back to Top
  1. Puig J, et al.
    Analysis of the expression of the AGL17-like clade of MADS-box transcription factors in rice.
    Gene Expr. Patterns, 2013 Jun-Jul. 13(5-6): p. 160-70
    [PMID:23466806]
  2. Yu C, et al.
    The effects of fluctuations in the nutrient supply on the expression of five members of the AGL17 clade of MADS-box genes in rice.
    PLoS ONE, 2014. 9(8): p. e105597
    [PMID:25140876]