PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

473042

Common Name

ARALYDRAFT_473042

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

Dof

Protein Properties

Length: 321aa MW: 34851.7 Da PI: 9.5648

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
473042	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	121.5	2.9e-38	33	93	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++ +lkcprCds+ntkfCyynnyslsqPr+fCkaC+ryWt+GG+lrnvPvGg+ rknk+++ 473042 33 PQPQLKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGSYRKNKRVK 93 67899*****************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	3.5E-33	36	91	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	4.0E-27	37	91	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.901	37	91	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	39	75	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 321 aa Download sequence Send to blast
MPIISSPNTN PLASMQSKNM IVASSHQQQP QQPQPQLKCP RCDSSNTKFC YYNNYSLSQP 60 RHFCKACKRY WTRGGTLRNV PVGGSYRKNK RVKRPSNATA TAASTVSTTT SSSPNNPHQI 120 SHFSSMNHHP LFYGLSDHMS SCNNLPMIPS RFSDSSKTSS TSGLESEFLS SGFSSLSALG 180 LGHPHHMSHD HTINGSFINN STTNKLFLLS GLFGSSMSSS SSSPTLLQHP NKPMNNGGDM 240 LGQSHLQTLA SLQDLHVGGN NEDMKYKEGK LDQISGNING FMSSSSLDPS NYNNMWNNAS 300 VVNGAWLDPT NNIVGSSLTS L

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	473042

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY299272	0.0	AY299272.1 Arabidopsis thaliana clone D2 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020870237.1	0.0	dof zinc finger protein DOF1.4
Swissprot	Q9FZA4	1e-165	DOF14_ARATH; Dof zinc finger protein DOF1.4
TrEMBL	D7KCV2	0.0	D7KCV2_ARALL; Uncharacterized protein (Fragment)
STRING	fgenesh2_kg.1__2996__AT1G28310.2	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4709	26	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28310.2	1e-147	Dof family protein

Link Out ? help Back to Top
Phytozome	473042
Entrez Gene	9329583