PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 473051
Common NameARALYDRAFT_473051
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ERF
Protein Properties Length: 161aa    MW: 17965.3 Da    PI: 10.1479
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
473051genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.85.6e-181968255
     AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
            +y+GVr ++ +gr++AeIrd ++    + r++lg+f+t+e Aa+a+++ + +++g
  473051 19 RYRGVRKRP-WGRYAAEIRDpFK----KSRVWLGTFDTPEAAARAYDKRAIEFRG 68
            6********.**********662....5********************9999988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103223.7491976IPR001471AP2/ERF domain
PfamPF008478.0E-121968IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-221977IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.5E-301976IPR001471AP2/ERF domain
CDDcd000181.05E-301977No hitNo description
SMARTSM003804.6E-341982IPR001471AP2/ERF domain
PRINTSPR003677.6E-112031IPR001471AP2/ERF domain
PRINTSPR003677.6E-114258IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
MTPTVKTAAV KTNDGNGVRY RGVRKRPWGR YAAEIRDPFK KSRVWLGTFD TPEAAARAYD  60
KRAIEFRGAK AKTNFPYYNI NQCLSLSQSQ SLSQSSTVES SIPAINLGSE SVSSRFPFPK  120
IQVKAGMMVV DERSESESSS VVMDLSYEGR RVVLDLDLNF P
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-2019841481Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Acts as a transcriptional inhibitor and may regulate other AtERFs (By similarity). {ECO:0000250, ECO:0000269|PubMed:11487705}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00164DAPTransfer from AT1G28370Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap473051
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0558820.0AB055882.1 Arabidopsis thaliana AtERF11 gene for ERF domain protein11, complete cds.
GenBankAC0101550.0AC010155.3 Genomic sequence for Arabidopsis thaliana BAC F3M18 from chromosome I, complete sequence.
GenBankAF3602320.0AF360232.1 Arabidopsis thaliana putative ethylene-responsive element binding factor (At1g28370) mRNA, complete cds.
GenBankAY0400320.0AY040032.1 Arabidopsis thaliana putative ethylene-responsive element binding factor (At1g28370) mRNA, complete cds.
GenBankAY0867830.0AY086783.1 Arabidopsis thaliana clone 27635 mRNA, complete sequence.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020870583.11e-116ethylene-responsive transcription factor 11
SwissprotQ9C5I31e-81ERF76_ARATH; Ethylene-responsive transcription factor 11
TrEMBLD7KCW01e-115D7KCW0_ARALL; Uncharacterized protein (Fragment)
STRINGfgenesh2_kg.1__3005__AT1G28370.11e-116(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28370.11e-75ERF domain protein 11
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Dubois M, et al.
    The ETHYLENE RESPONSE FACTORs ERF6 and ERF11 Antagonistically Regulate Mannitol-Induced Growth Inhibition in Arabidopsis.
    Plant Physiol., 2015. 169(1): p. 166-79
    [PMID:25995327]
  3. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  4. Zhou X, et al.
    The ERF11 Transcription Factor Promotes Internode Elongation by Activating Gibberellin Biosynthesis and Signaling.
    Plant Physiol., 2016. 171(4): p. 2760-70
    [PMID:27255484]