PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

473207

Common Name

ARALYDRAFT_473207

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

bHLH

Protein Properties

Length: 249aa MW: 27478.7 Da PI: 4.4194

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
473207	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	12	0.0004	196	232	13	54
HHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 13 RdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R+++++ + Lr+++P + ++ a +L +Av+Y+ksL 473207 196 RKKMKKMMGVLRRIVPGG-----EQMNTACVLDEAVQYLKSL 232 899***********95.....68*************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	10.366	183	232	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.75E-7	196	242	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	8.3E-6	196	239	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 249 aa Download sequence Send to blast
MQNNQFPHFS DEVGDRNMHN PYASGSSFDA LFPPCAKLPY HGVELQPSAV CPKNFVIFDQ 60 TYDRSQVMYH PELTHKLMNT PSLNNLASTF QNEYSGGSYG NYGNYDQEAS SSYQEDPNEI 120 DALLSADEDY EDDDNEADED GDSEEVSTAR NSSRDYGNTS AESCCSSYGY NNNNNNNSRK 180 QSLSGSASSN NDGKGRKKMK KMMGVLRRIV PGGEQMNTAC VLDEAVQYLK SLKIEAQKLG 240 VGHFSNQS*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	194	202	GRKKMKKMM

Cis-element ? help Back to Top
Source	Link
PlantRegMap	473207

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC008030	0.0	AC008030.4 Arabidopsis thaliana chromosome I BAC F1N18 genomic sequence, complete sequence.
GenBank	AC022455	0.0	AC022455.5 Arabidopsis thaliana chromosome 1 BAC T1P2 genomic sequence, complete sequence.
GenBank	AF361607	0.0	AF361607.1 Arabidopsis thaliana F1N18.24/F1N18.24 mRNA, complete cds.
GenBank	AK230374	0.0	AK230374.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL24-26-M05.
GenBank	AK318702	0.0	AK318702.1 Arabidopsis thaliana AT1G29950 mRNA, complete cds, clone: RAFL07-45-G13.
GenBank	AY074843	0.0	AY074843.1 Arabidopsis thaliana F1N18.24/F1N18.24 mRNA, complete cds.
GenBank	CP002684	0.0	CP002684.1 Arabidopsis thaliana chromosome 1 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020868544.1	0.0	transcription factor bHLH144
Refseq	XP_020868545.1	0.0	transcription factor bHLH144
Swissprot	Q9ASX9	1e-144	BH144_ARATH; Transcription factor bHLH144
TrEMBL	D7KEN4	0.0	D7KEN4_ARALL; Uncharacterized protein
STRING	fgenesh2_kg.1__3161__AT1G29950.1	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6195	16	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G29950.2	1e-128	bHLH family protein

Link Out ? help Back to Top
Phytozome	473207
Entrez Gene	9329651

Publications ? help Back to Top
Katayama H, et al. A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem. Curr. Biol., 2015. 25(23): p. 3144-50 [PMID:26616019] Cai Q, et al. The SAC51 Family Plays a Central Role in Thermospermine Responses in Arabidopsis. Plant Cell Physiol., 2016. 57(8): p. 1583-92 [PMID:27388339] Yamamoto M,Takahashi T Thermospermine enhances translation of SAC51 and SACL1 in Arabidopsis. Plant Signal Behav, 2017. 12(1): p. e1276685 [PMID:28045577]