PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 473420
Common NameARALYDRAFT_473420
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family HSF
Protein Properties Length: 483aa    MW: 54120.3 Da    PI: 4.6682
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
473420genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1149.5e-36401322103
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+y++++d+++++++sws+++nsf+v+d+ efa+++Lpk Fkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+k+ll++i 
        473420  40 FLSKTYDMVDDPATDSIVSWSDTNNSFIVWDPPEFARDLLPKNFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQKHLLKTIT 127
                   9****************************************************************999.........******************** PP

                   XXXXX CS
  HSF_DNA-bind  99 rkkse 103
                   r+k +
        473420 128 RRKPA 132
                   *9965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.1E-3933124IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.6E-6336129IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467853.26E-3636129IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000562.9E-194063IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.1E-3140129IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.9E-197890IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434079103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.9E-1991103IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 483 aa     Download sequence    Send to blast
MDGVTSKVTT SDGGGESMEI KPSPQPQPAA ILSSNAPPPF LSKTYDMVDD PATDSIVSWS  60
DTNNSFIVWD PPEFARDLLP KNFKHNNFSS FVRQLNTYGF RKVDPDRWEF ANEGFLRGQK  120
HLLKTITRRK PAQGHGHGHP QSQNSNGQNS SVSACVEVGK FGLEEEVERL KRDKNVLMQE  180
LVRLRQQQQS TDNQLQTMVQ RLQGMENRQQ QLMSFLAKAV QSPHFLSQFL QQQNQQNERR  240
ISDTNKKRRF KRDGIVRKND SASPDGQIVK YQPPMHEQAK AMFKQLMKME PYKTGDDGFL  300
LGNGTSTTEG TEMETSSNHA SGITLQEMPT ASEIQSSSPS IGTTPENVSA VPEGTENCIP  360
SPDDLTLPEF THMLPENNAE KPPENFMEPN MGGSSPLLDP DLLINFDIDD FPMDPDMGPV  420
DYKLLEDLLM SSPVPDNMDF TPVDNETEQK QNGWDKTKQM DNLTQQMGLL SPETIDLSRQ  480
NP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B4e-262812918129Heat shock factor protein 1
5d5v_B4e-262812918129Heat shock factor protein 1
5d5v_D4e-262812918129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1244251NKKRRFKR
2245250KKRRFK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMap473420
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0841100.0AC084110.4 Arabidopsis thaliana chromosome 1 BAC F27G20 genomic sequence, complete sequence.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankF5D140.0AC007767.3 Sequence of BAC F5D14 from Arabidopsis thaliana chromosome 1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020867922.10.0heat stress transcription factor A-1d
SwissprotQ9LQM70.0HFA1D_ARATH; Heat stress transcription factor A-1d
TrEMBLD7KHI80.0D7KHI8_ARALL; ATHSFA1D
STRINGfgenesh2_kg.1__3374__AT1G32330.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM64702440
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32330.10.0heat shock transcription factor A1D
Publications ? help Back to Top
  1. Higashi Y, et al.
    HsfA1d, a protein identified via FOX hunting using Thellungiella salsuginea cDNAs improves heat tolerance by regulating heat-stress-responsive gene expression.
    Mol Plant, 2013. 6(2): p. 411-22
    [PMID:23393165]
  2. Jung HS, et al.
    Subset of heat-shock transcription factors required for the early response of Arabidopsis to excess light.
    Proc. Natl. Acad. Sci. U.S.A., 2013. 110(35): p. 14474-9
    [PMID:23918368]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Ohama N, et al.
    The Transcriptional Cascade in the Heat Stress Response of Arabidopsis Is Strictly Regulated at the Level of Transcription Factor Expression.
    Plant Cell, 2016. 28(1): p. 181-201
    [PMID:26715648]